NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37678.1 Public Mus musculus 17 Ralbp1 23 108 98 CCDS HistoryNCBI Gene:19765Re-query CCDS DB by CCDS ID:37678.1Re-query CCDS DB by GeneID:19765See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024905.10 ENSMUSP00000024905.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024905.10Link to Ensembl Protein Viewer:ENSMUSP00000024905.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000024905Re-query CCDS DB by Protein ID:ENSMUSP00000024905
Original member Current member EBI ENSMUST00000166543.9 ENSMUSP00000129448.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166543.9Link to Ensembl Protein Viewer:ENSMUSP00000129448.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000166543Re-query CCDS DB by Protein ID:ENSMUSP00000129448
Original member Current member NCBI NM_001198949.1 NP_001185878.1 Accepted alive Link to Nucleotide Sequence:NM_001198949.1Link to Protein Sequence:NP_001185878.1Re-query CCDS DB by Nucleotide ID:NM_001198949Re-query CCDS DB by Protein ID:NP_001185878Link to BLAST:NP_001185878.1
Original member Current member NCBI NM_009067.5 NP_033093.2 Accepted alive Link to Nucleotide Sequence:NM_009067.5Link to Protein Sequence:NP_033093.2Re-query CCDS DB by Nucleotide ID:NM_009067Re-query CCDS DB by Protein ID:NP_033093Link to BLAST:NP_033093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185878.1 648 Q62172 648 100% 0 0
NP_033093.2 648 Q62172 648 100% 0 0

Chromosomal Locations for CCDS 37678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 65849950 65850195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65852120 65852243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65852690 65852811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65854092 65854199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65857662 65857793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65858973 65859134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65861256 65861605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65864274 65864732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 65867532 65867775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGACTGAGTGCTTCCTGCCCCCGAGCAGCAGCCCTAGTGAACACCGCAGGGCCGAGCATGGCAGCGGGC
TGACCCGGACCCCCAGCTCTGAGGAGATCAGTCCTACAAAGTTCCCTGGATTGTACCGGACAGGCGAGCC
CTCGCCTCCCCATGACGTCCTCCATGAGCCTCCTGATACAGTGTCAGATGACGACAAAGACCATGGAAAG
AAAAAAGGGAAATTTAAGAAAAAGGAGAAAAGGACTGAAGGCTACGCTGCCTTCCAGGAAGACAGCTCTG
GAGATGAAGCTGAAAGTCCTTCCAAGGTGAAGAGGTCCAAGGGAATCCATGTGTTCAAAAAGCCCAGTTT
CTCTAAAAAGAAGGAAAAAGATTTTAAAATCAAAGAAAAACCCAAAGAAGAAAAGCATAAAGAAGAAAAG
CACAAAGAGGAAAAGCATAAAGAAAAGAAATCGAAAGACTTGACAGCAGCTGATGTTGTTAAACAGTGGA
AGGAAAAGAAGAAAAAGAAAAAGCCAATTCAGGAGCCAGAGGTGCCTCAGATGGACGCACCGAGTGTCAA
GCCCATTTTTGGGGTTCCCTTGGTTGACGCAGTAGAGAGGACCATGATGTACGACGGCGTCCGGCTGCCA
GCTGTCTTCCGGGAGTGTGTGGACTACATGGAGAAGCACGGCATGAAGTGTGAAGGCGTCTACCGGGTGT
CAGGAATCAAATCAAAGGTAGATGAGCTAAAAGCAGCCTATGACCGAGAGGAGTCTCCAAACTTAGAAGA
ATATGAGCCTAACACTGTAGCCAGCTTGCTGAAGCAGTATTTGCGAGACCTTCCAGAGAATTTGCTTACC
AAAGAGCTTATGCCCCGGTTTGAAGAGGCTTGTGGGAAGACCACAGAGATGGAGAAAGTGCAGGAATTCC
AGCGCTTGCTCCGGGAACTGCCGGAGTGCAATCATCTTCTGCTTTCCTGGCTCATTGTGCACCTGGACCA
CGTCATTGCGAAGGAGCTGGAAACGAAGATGAACATCCAGAACATCTCTATAGTGCTGAGCCCCACCGTG
CAGATCAGCAATCGGGTCCTGTACGTGCTTTTCACACATGTGCAAGAGCTCTTTGGCACCGTGGTCCTGA
AGCAAGTAACAAGACCTCTGCGCTGGTCCAACATGGCCACGATGCCCACACTGCCAGAGACCCAAGCAGG
CATCAAGGAGGAGATCAGGAGACAGGAGTTCCTTTTGAATTGTTTACATCGAGATCTGCAGGGCGGGATA
AAGGACTTATCTAAAGAAGAAAGATTATGGGAAGTACAGAGGATTCTGACTGCCCTCAAGAGAAAGCTGA
GGGAAGCTAAAAGACAAGAGTGTGAAACCAAGATTGCACAGGAGATAGCTAGTCTTTCAAAAGAGGATGT
TTCCAAAGAAGAAATGAATGAAAACGAAGAAGTTATAAATATCCTTCTTGCCCAGGAGAATGAAATCCTG
ACAGAACAGGAGGAGCTCCTGGCCATGGAGCAGTTCCTGCGTCGTCAGATCGCCTCAGAGAAAGAAGAGA
TCGACCGCCTCCGAGCTGAAATTGCGGAGATCCAGAGCCGTCAGCAGCATGGCCGCAGTGAGACGGAGGA
GTACTCGTCCGACAGCGAGAGTGAGAGCGAGGACGAGGAGGAGCTGCAGCTCATCCTGGAGGACCTGCAG
CGGCAGAACGAGGAGTTAGAAATAAAGAACAATCACTTGAACCAAGCAGTCCATGAGGAGCGGGAGGCCA
TCATCGAGCTCCGAGTGCAGCTCCGGCTGCTCCAGATGCAGCGAGCCAAGTCTGAGCAGCAGCCGCAGGA
GGAGGAGGAGCCCGAGAGGCGAGGGGGCATAGGCCCACCGCCCTGTGACGGTGTCCTCGAGGTGCGGGTA
GCCAAGGAGCAGGCGAAGGCCTCGCCCAGCAAAGACCGGAAGGAGACGCCCATCTGA

Translation (648 aa):
MTECFLPPSSSPSEHRRAEHGSGLTRTPSSEEISPTKFPGLYRTGEPSPPHDVLHEPPDTVSDDDKDHGK
KKGKFKKKEKRTEGYAAFQEDSSGDEAESPSKVKRSKGIHVFKKPSFSKKKEKDFKIKEKPKEEKHKEEK
HKEEKHKEKKSKDLTAADVVKQWKEKKKKKKPIQEPEVPQMDAPSVKPIFGVPLVDAVERTMMYDGVRLP
AVFRECVDYMEKHGMKCEGVYRVSGIKSKVDELKAAYDREESPNLEEYEPNTVASLLKQYLRDLPENLLT
KELMPRFEEACGKTTEMEKVQEFQRLLRELPECNHLLLSWLIVHLDHVIAKELETKMNIQNISIVLSPTV
QISNRVLYVLFTHVQELFGTVVLKQVTRPLRWSNMATMPTLPETQAGIKEEIRRQEFLLNCLHRDLQGGI
KDLSKEERLWEVQRILTALKRKLREAKRQECETKIAQEIASLSKEDVSKEEMNENEEVINILLAQENEIL
TEQEELLAMEQFLRRQIASEKEEIDRLRAEIAEIQSRQQHGRSETEEYSSDSESESEDEEELQLILEDLQ
RQNEELEIKNNHLNQAVHEEREAIIELRVQLRLLQMQRAKSEQQPQEEEEPERRGGIGPPPCDGVLEVRV
AKEQAKASPSKDRKETPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH