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Report for CCDS4753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4753.1 Public Homo sapiens 6 HLA-DQA2 24 110 108 CCDS HistoryNCBI Gene:3118Re-query CCDS DB by CCDS ID:4753.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4753.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374940.4 ENSP00000364076.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374940.4Link to Ensembl Protein Viewer:ENSP00000364076.3Re-query CCDS DB by Nucleotide ID:ENST00000374940Re-query CCDS DB by Protein ID:ENSP00000364076
Original member Current member NCBI NM_020056.5 NP_064440.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020056.5Link to Protein Sequence:NP_064440.1Re-query CCDS DB by Nucleotide ID:NM_020056Re-query CCDS DB by Protein ID:NP_064440Link to BLAST:NP_064440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064440.1 255 P01906 255 100% 0 0

Chromosomal Locations for CCDS 4753.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32741444 32741525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32745159 32745407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32745791 32746072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32746240 32746394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGATCCTAAACAAAGCTCTGCTGCTGGGGGCCCTCGCCCTGACTGCCGTGATGAGCCCCTGTGGAGGTG
AAGACATTGTGGCTGACCATGTTGCCTCCTATGGTGTGAACTTCTACCAGTCTCACGGTCCCTCTGGCCA
GTACACCCATGAATTTGATGGAGACGAGGAGTTCTATGTGGACCTGGAGACGAAAGAGACTGTCTGGCAG
TTGCCTATGTTTAGCAAATTTATAAGTTTTGACCCGCAGAGTGCACTGAGAAATATGGCTGTGGGAAAAC
ACACCTTGGAATTCATGATGAGACAGTCCAACTCTACCGCTGCCACCAATGAGGTTCCTGAGGTCACAGT
GTTTTCCAAGTTTCCTGTGACGCTGGGTCAGCCCAACACCCTCATCTGTCTTGTGGACAACATCTTTCCT
CCTGTGGTCAACATCACCTGGCTGAGCAATGGGCACTCAGTCACAGAAGGTGTTTCTGAGACCAGCTTCC
TCTCCAAGAGTGATCATTCCTTCTTCAAGATCAGTTACCTCACCTTCCTCCCTTCTGCTGATGAGATTTA
TGACTGCAAGGTGGAGCACTGGGGCCTGGACGAGCCTCTTCTGAAACACTGGGAGCCTGAGATTCCAGCC
CCTATGTCAGAGCTCACAGAGACTTTGGTCTGCGCCCTGGGGTTGTCTGTGGGCCTCATGGGCATTGTGG
TGGGCACTGTCTTCATCATCCAAGGCCTGCGTTCAGTTGGTGCTTCCAGACACCAAGGGCTCTTATGA

Translation (255 aa):
MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYVDLETKETVWQ
LPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSKFPVTLGQPNTLICLVDNIFP
PVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDEPLLKHWEPEIPA
PMSELTETLVCALGLSVGLMGIVVGTVFIIQGLRSVGASRHQGLL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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