NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6256.1 Public Homo sapiens 8 RUNX1T1 24 110 108 CCDS HistoryNCBI Gene:862Re-query CCDS DB by CCDS ID:6256.1Re-query CCDS DB by GeneID:862See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265814.4 ENSP00000265814.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000265814.4Link to Ensembl Protein Viewer:ENSP00000265814.3Re-query CCDS DB by Nucleotide ID:ENST00000265814Re-query CCDS DB by Protein ID:ENSP00000265814
Original member Current member EBI ENST00000523629.5 ENSP00000428543.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523629.5Link to Ensembl Protein Viewer:ENSP00000428543.1Re-query CCDS DB by Nucleotide ID:ENST00000523629Re-query CCDS DB by Protein ID:ENSP00000428543
Original member Current member EBI ENST00000617740.4 ENSP00000481112.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617740.4Link to Ensembl Protein Viewer:ENSP00000481112.1Re-query CCDS DB by Nucleotide ID:ENST00000617740Re-query CCDS DB by Protein ID:ENSP00000481112
Original member Current member EBI ENST00000614812.4 ENSP00000481315.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614812.4Link to Ensembl Protein Viewer:ENSP00000481315.1Re-query CCDS DB by Nucleotide ID:ENST00000614812Re-query CCDS DB by Protein ID:ENSP00000481315
Original member Current member EBI ENST00000613302.4 ENSP00000481799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613302.4Link to Ensembl Protein Viewer:ENSP00000481799.1Re-query CCDS DB by Nucleotide ID:ENST00000613302Re-query CCDS DB by Protein ID:ENSP00000481799
Original member Current member NCBI NM_001198626.2 NP_001185555.1 Accepted alive Link to Nucleotide Sequence:NM_001198626.2Link to Protein Sequence:NP_001185555.1Re-query CCDS DB by Nucleotide ID:NM_001198626Re-query CCDS DB by Protein ID:NP_001185555Link to BLAST:NP_001185555.1
Original member Current member NCBI NM_001198627.2 NP_001185556.1 Accepted alive Link to Nucleotide Sequence:NM_001198627.2Link to Protein Sequence:NP_001185556.1Re-query CCDS DB by Nucleotide ID:NM_001198627Re-query CCDS DB by Protein ID:NP_001185556Link to BLAST:NP_001185556.1
Original member Current member NCBI NM_001198628.2 NP_001185557.1 Accepted alive Link to Nucleotide Sequence:NM_001198628.2Link to Protein Sequence:NP_001185557.1Re-query CCDS DB by Nucleotide ID:NM_001198628Re-query CCDS DB by Protein ID:NP_001185557Link to BLAST:NP_001185557.1
Original member Current member NCBI NM_001198629.2 NP_001185558.1 Accepted alive Link to Nucleotide Sequence:NM_001198629.2Link to Protein Sequence:NP_001185558.1Re-query CCDS DB by Nucleotide ID:NM_001198629Re-query CCDS DB by Protein ID:NP_001185558Link to BLAST:NP_001185558.1
Original member Current member NCBI NM_001198630.2 NP_001185559.1 Accepted alive Link to Nucleotide Sequence:NM_001198630.2Link to Protein Sequence:NP_001185559.1Re-query CCDS DB by Nucleotide ID:NM_001198630Re-query CCDS DB by Protein ID:NP_001185559Link to BLAST:NP_001185559.1
Original member Current member NCBI NM_001198631.2 NP_001185560.1 Accepted alive Link to Nucleotide Sequence:NM_001198631.2Link to Protein Sequence:NP_001185560.1Re-query CCDS DB by Nucleotide ID:NM_001198631Re-query CCDS DB by Protein ID:NP_001185560Link to BLAST:NP_001185560.1
Original member Current member NCBI NM_175634.3 NP_783552.1 Accepted alive Link to Nucleotide Sequence:NM_175634.3Link to Protein Sequence:NP_783552.1Re-query CCDS DB by Nucleotide ID:NM_175634Re-query CCDS DB by Protein ID:NP_783552Link to BLAST:NP_783552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185555.1 604 Q06455-1 604 100% 0 0
NP_001185556.1 604 Q06455-1 604 100% 0 0
NP_001185557.1 604 Q06455-1 604 100% 0 0
NP_001185558.1 604 Q06455-1 604 100% 0 0
NP_001185559.1 604 Q06455-1 604 100% 0 0
NP_001185560.1 604 Q06455-1 604 100% 0 0
NP_783552.1 604 Q06455-1 604 100% 0 0

Chromosomal Locations for CCDS 6256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 91960242 91960517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91970658 91970848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91975905 91975973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91986124 91986325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91986887 91986972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 91991639 91991889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92005116 92005297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92011002 92011091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92014579 92014820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92017226 92017363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 92075965 92076052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1815 nt):
ATGATATCTGTCAAAAGAAACACTTGGAGAGCACTGAGTTTAGTAATAGGTGACTGCCGGAAAAAAGGGA
ACTTTGAATATTGTCAAGATCGTACTGAGAAGCACTCCACAATGCCAGACTCACCTGTGGATGTGAAGAC
GCAATCTAGGCTGACTCCTCCAACAATGCCACCTCCCCCAACTACTCAAGGAGCTCCAAGAACCAGTTCA
TTTACACCGACAACGTTAACTAATGGCACGAGCCATTCTCCTACAGCCTTGAATGGCGCCCCCTCACCAC
CCAATGGCTTCAGCAATGGGCCTTCCTCTTCTTCCTCCTCCTCTCTGGCTAATCAACAGCTGCCCCCAGC
CTGTGGTGCCAGGCAACTCAGCAAGCTGAAAAGGTTCCTTACTACCCTGCAGCAGTTTGGCAATGACATT
TCACCCGAGATAGGAGAAAGAGTTCGCACCCTCGTTCTGGGACTAGTGAACTCCACTTTGACAATTGAAG
AATTTCATTCCAAACTGCAAGAAGCTACTAACTTCCCACTGAGACCTTTTGTCATCCCATTTTTGAAGGC
CAACTTGCCCCTGCTGCAGCGTGAGCTCCTCCACTGCGCAAGACTGGCCAAACAGAACCCTGCCCAGTAC
CTCGCCCAGCATGAACAGCTGCTTCTGGATGCCAGCACCACCTCACCTGTTGACTCCTCAGAGCTGCTTC
TCGATGTGAACGAAAACGGGAAGAGGCGAACTCCAGACAGAACCAAAGAAAATGGCTTTGACAGAGAGCC
TTTGCACTCAGAACATCCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCGGTACAGTCCAAATAAC
GGCTTATCCTACCAGCCCAATGGCCTGCCTCACCCTACCCCACCTCCACCTCAGCATTACCGTTTGGATG
ATATGGCCATTGCCCACCACTACAGGGACTCCTATCGACACCCCAGCCACAGGGACCTCAGGGACAGAAA
CAGACCTATGGGGTTGCATGGCACACGTCAAGAAGAAATGATTGATCACAGACTAACAGACAGAGAATGG
GCAGAAGAGTGGAAACATCTTGACCATCTGTTAAACTGCATAATGGACATGGTAGAAAAAACAAGGCGAT
CTCTCACCGTACTAAGGCGGTGTCAAGAAGCAGACCGGGAAGAATTGAATTACTGGATCCGGCGGTACAG
TGACGCCGAGGACTTAAAAAAAGGTGGCGGCAGTAGCAGCAGCCACTCTAGGCAGCAGAGTCCCGTCAAC
CCAGACCCAGTTGCACTAGACGCGCATCGGGAATTCCTTCACAGGCCTGCGTCTGGATACGTGCCAGAGG
AGATCTGGAAGAAAGCTGAGGAGGCCGTCAATGAGGTGAAGCGCCAGGCGATGACGGAGCTGCAGAAGGC
CGTGTCTGAGGCGGAGCGGAAAGCCCACGACATGATCACAACAGAGAGGGCCAAGATGGAGCGCACGGTC
GCCGAGGCCAAACGGCAGGCGGCGGAGGACGCACTGGCAGTTATCAATCAGCAGGAGGATTCAAGCGAGA
GTTGCTGGAATTGTGGCCGTAAAGCGAGTGAAACCTGCAGTGGCTGTAACACAGCCCGATACTGTGGCTC
ATTTTGCCAGCACAAAGACTGGGAGAAGCACCATCACATCTGTGGACAGACCCTGCAGGCCCAGCAGCAG
GGAGACACACCTGCAGTCAGCTCCTCTGTCACGCCCAACAGCGGGGCTGGGAGCCCGATGGACACACCAC
CAGCAGCCACTCCGAGGTCAACCACCCCGGGAACCCCTTCCACCATAGAGACAACCCCTCGCTAG

Translation (604 aa):
MISVKRNTWRALSLVIGDCRKKGNFEYCQDRTEKHSTMPDSPVDVKTQSRLTPPTMPPPPTTQGAPRTSS
FTPTTLTNGTSHSPTALNGAPSPPNGFSNGPSSSSSSSLANQQLPPACGARQLSKLKRFLTTLQQFGNDI
SPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQNPAQY
LAQHEQLLLDASTTSPVDSSELLLDVNENGKRRTPDRTKENGFDREPLHSEHPSKRPCTISPGQRYSPNN
GLSYQPNGLPHPTPPPPQHYRLDDMAIAHHYRDSYRHPSHRDLRDRNRPMGLHGTRQEEMIDHRLTDREW
AEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGGGSSSSHSRQQSPVN
PDPVALDAHREFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTERAKMERTV
AEAKRQAAEDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQQ
GDTPAVSSSVTPNSGAGSPMDTPPAATPRSTTPGTPSTIETTPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH