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Report for CCDS16897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16897.1 Public Mus musculus 2 Id1 23 108 98 CCDS HistoryNCBI Gene:15901Re-query CCDS DB by CCDS ID:16897.1Re-query CCDS DB by GeneID:15901See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038368.8 ENSMUSP00000092019.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038368.8Link to Ensembl Protein Viewer:ENSMUSP00000092019.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000038368Re-query CCDS DB by Protein ID:ENSMUSP00000092019
Original member Current member NCBI NM_010495.3 NP_034625.1 Accepted alive Link to Nucleotide Sequence:NM_010495.3Link to Protein Sequence:NP_034625.1Re-query CCDS DB by Nucleotide ID:NM_010495Re-query CCDS DB by Protein ID:NP_034625Link to BLAST:NP_034625.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034625.1 148 P20067-2 148 100% 0 0

Chromosomal Locations for CCDS 16897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152736341 152736745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 152736972 152737013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGAAGGTCGCCAGTGGCAGTGCCGCAGCCGCTGCAGGCCCTAGCTGTTCGCTGAAGGCGGGCAGGACAG
CGGGCGAGGTGGTACTTGGTCTGTCGGAGCAAAGCGTGGCCATCTCGCGCTGCGCTGGGACGCGCCTGCC
CGCCTTGCTGGACGAGCAGCAGGTGAACGTCCTGCTCTACGACATGAACGGCTGCTACTCACGCCTCAAG
GAGCTGGTGCCCACCCTGCCCCAGAACCGCAAAGTGAGCAAGGTGGAGATCCTGCAGCATGTAATCGACT
ACATCAGGGACCTGCAGCTGGAGCTGAACTCGGAGTCTGAAGTCGGGACCACCGGAGGCCGGGGACTGCC
TGTCCGCGCCCCGCTCAGCACCCTGAACGGCGAGATCAGTGCCTTGGCGGCCGAGGCGGCATGTGTTCCA
GCCGACGATCGCATCTTGTGTCGCTGA

Translation (148 aa):
MKVASGSAAAAAGPSCSLKAGRTAGEVVLGLSEQSVAISRCAGTRLPALLDEQQVNVLLYDMNGCYSRLK
ELVPTLPQNRKVSKVEILQHVIDYIRDLQLELNSESEVGTTGGRGLPVRAPLSTLNGEISALAAEAACVP
ADDRILCR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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