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Report for CCDS22793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22793.1 Public Mus musculus 9 Cwf19l2 23 108 98 CCDS HistoryNCBI Gene:244672Re-query CCDS DB by CCDS ID:22793.1Re-query CCDS DB by GeneID:244672See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027027.6 ENSMUSP00000027027.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027027.6Link to Ensembl Protein Viewer:ENSMUSP00000027027.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000027027Re-query CCDS DB by Protein ID:ENSMUSP00000027027
Original member Current member NCBI NM_027545.2 NP_081821.1 Accepted alive Link to Nucleotide Sequence:NM_027545.2Link to Protein Sequence:NP_081821.1Re-query CCDS DB by Nucleotide ID:NM_027545Re-query CCDS DB by Protein ID:NP_081821Link to BLAST:NP_081821.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081821.1 887 Q8BG79-1 887 100% 0 0

Chromosomal Locations for CCDS 22793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 3404098 3404190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3409966 3410076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3411329 3411451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3417869 3417982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3418656 3418775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3421286 3421376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3428668 3428783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3430438 3431087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3441055 3441145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3442961 3443047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3447237 3447353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3450014 3450151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3454540 3454752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3456733 3456849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3458734 3458889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3460051 3460131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3475483 3475584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 3477817 3477960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2664 nt):
ATGGAGGCGTTTAGTGTAAGATTTGAAAGTGCTAGCAGTATCGAAGAGCGAAAAGAACAGACCCGTAATG
CCAGGGCCGAGGTGTTACGCCAGGCCAAACATAATTTTGAGAAAGAACAAAGGGGTGAAGAACGTAAGCG
ACTTCGGGATGAGGACACATGGATGCTTCCTGATGTGCATGAGCGAATTGAACAGTTCTCACAGGAACAT
TCTGAGAAGAAAAAGAAGAAAAAGGACAAGCATTCAAAAAAAGTGAAGAAAGAGAAGAAGAAGAAGAGGA
AGAAACAGAAATGTCAGAAACAGAGTGAGTCGACTGACAGCTCCGCAAGCTCTGAAGATGAGTGGGTTGA
GGCTGCTCCCTCCCAGATATCTGACAAAGAAAAGACCTGGAAAGTGAAAGACAAAAGGACAGAAGAAGAA
TGTGACAGCCACGATATTCAGCGTGATGAGTGGATGACTATTGATTTTATGTCCATTAAAACTGTGTCCT
CATCATCACTCAAAGCTGAAAAGGAAACTCTAAGACAAATAGAGCGGGAGAAAACCCAAGTGTTAGAGCA
GTCCAAACTGCTCGAAAGAGAATTGAATCCATACTGGAAGGACGGGGGGACAGGTCTCCCATCAAAAACC
TGTATACTTCCAGTTACTAAAGCTAAAGGAGTGGAGGATGGCGGATTAAGCTGGCTAAGAAAGTCTTGTC
AAAGAATGAAGGAACAAGCTCAAAAAGAAAACAGAAATTTTGAAGATATTGTAGCTGAAAAATACGGGTC
AATGGAAATATTTCAGTCAAAATTAAAAGAAGCTGAAAAAATTGCATACAAAAAAGAAGACTGTGGATGG
GAACGGTGGAGAAAGCCTACATATTCAGATAGAGCACAGTGTAGTCAAGCAAGTGGCACATCAGACTTAG
TGAAATGTAAAAATCTCTCAGAGGACAGACACCTGGAAATGGAGCCAGCAAATAGCAGCAACTATAAGTT
TAGTGGTCCTGACACAGGGAAGAGATCTGGGACTTTACAAACCTGTAGAAGGGAATCTGCCCTAAGAAAA
AACCAAGATTCTTCTGGAAATTTGAGATCTAAATTCTTAAGACCCTCTGATGAAGATGAATTGTCATTTC
ACAAGAGGAAAAATTTTGAATCATCTAGTTCATATTCTCCATTAGTGGCTCAGGCTTCTTTGCATTGTGA
CTTTCGAAAACTCACAGAGAACAGTGAAGAAAGTTCAGCATCCTGCAGTCGATCTGATAGGCGACAAGAA
AACAGGAAGCCTTCAGATAAAAAGCCATTGGAAACCTGGAGCTACAACGCCAACCAGCACTCTACAGGAG
GTAGAAGAGAACAGTTACAGGCTGAGAGCATGAGTTGTGATCCACCAGGAAGAGGACTTCAGCAAGACAT
GACATTGACAATCGCTGGTCCAGAGGCAGAGTCCACCTATATCTTAAATGTTGATGAAAAGAACAAGTTG
GGGGCCAAGATTATCAAGGCAGAAATGATGGGGAATATGGAATTAGCTGAACAACTTAAAGCCCAACTTA
AAGAGGCAAATAAATTTAAAGAAACACAGATGCCGGCAAAAAGATTGGGCGTAGAGCATGAAGATGAACA
AGAAGTAATCCTTATTCAAACAGATAAGTCTGGAAGAATGTGGCCTGTGAGCAGCCCTAGAGAAACCCTG
GATATGAAAGCAGAACGAAGGAAGAGAAAGAGAGTTTCAACCCATGAGGATAAAGAAAGGGTCCGATACT
TTCCTGATGATGATCATTTGAGCCTCAAAGATTTAGTCAAGAATGAGAAAATAGGAACAGATATCAACCA
AAACAGACTTTTCATGAAAATGGCATCTAAGTTTATGGGAAAATCAGATGAAGACAATTATACTCTGGAT
GACATGTTTGTCTCCAAAGCAGCTGAGAAAGAGCATCTTGGTAAGAAGGAAGAGAGCCAGAGGAGAAGAG
CGATTGCTGAGCACCAGAGTCTTGCTGCAAAAATGGCAAAGTGCCTTTACTGTTTTGACAGCTCTCAGTT
CCCCAAGCACCTTATTGTTGCAATCGGTGTGAAGGTTTATTTATGTTTACCCAGTTTCCAGTCTCTTACT
GAAGGACACTGCTTCATAGTCCCTCTGCAACATCATCAAGCAGCCACTGTATTAGATGAAGATGTCTGGG
AGGAGATCCAGATGTTTCGAAAATCATTGGTAAAAATGTTTGAAGATAAAGAATTGGATTGTATCTTTTT
GGAGACTAATATGGGTTTGAAGAAACACTATCATATGGTTTATGAGTGTATCCCTCTCCCAAAGGAAGTG
GGTGATATGGCTCCCATCTATTTTAAGAAAGCCATAATGGAATCTGATGAAGAATGGTCCATGAATAAGA
AGTTGATTGATTTGTCTTCAAAAGATATTAGAAAGTCTGTGCCCAGAGGTTTGCCTTACTTTGCTGTCGA
CTTTGGTCTTCAGGGAGGTTTTGCCCACATCATTGAAGATCAGTACAGATTCCCTCATTACTTTGGAAAG
GAAATCATTGGTGGTATGCTGGATCTAGAACCTAGACTATGGAGGAAGGGGATCCGAGAAAGCTTTGAGG
ACCAGAGGAAGAAATCATTGCAGTTTGCTCAGTGGTGGAAACCATATGATATCACCAAAAGTAAAAGCTC
TTAA

Translation (887 aa):
MEAFSVRFESASSIEERKEQTRNARAEVLRQAKHNFEKEQRGEERKRLRDEDTWMLPDVHERIEQFSQEH
SEKKKKKKDKHSKKVKKEKKKKRKKQKCQKQSESTDSSASSEDEWVEAAPSQISDKEKTWKVKDKRTEEE
CDSHDIQRDEWMTIDFMSIKTVSSSSLKAEKETLRQIEREKTQVLEQSKLLERELNPYWKDGGTGLPSKT
CILPVTKAKGVEDGGLSWLRKSCQRMKEQAQKENRNFEDIVAEKYGSMEIFQSKLKEAEKIAYKKEDCGW
ERWRKPTYSDRAQCSQASGTSDLVKCKNLSEDRHLEMEPANSSNYKFSGPDTGKRSGTLQTCRRESALRK
NQDSSGNLRSKFLRPSDEDELSFHKRKNFESSSSYSPLVAQASLHCDFRKLTENSEESSASCSRSDRRQE
NRKPSDKKPLETWSYNANQHSTGGRREQLQAESMSCDPPGRGLQQDMTLTIAGPEAESTYILNVDEKNKL
GAKIIKAEMMGNMELAEQLKAQLKEANKFKETQMPAKRLGVEHEDEQEVILIQTDKSGRMWPVSSPRETL
DMKAERRKRKRVSTHEDKERVRYFPDDDHLSLKDLVKNEKIGTDINQNRLFMKMASKFMGKSDEDNYTLD
DMFVSKAAEKEHLGKKEESQRRRAIAEHQSLAAKMAKCLYCFDSSQFPKHLIVAIGVKVYLCLPSFQSLT
EGHCFIVPLQHHQAATVLDEDVWEEIQMFRKSLVKMFEDKELDCIFLETNMGLKKHYHMVYECIPLPKEV
GDMAPIYFKKAIMESDEEWSMNKKLIDLSSKDIRKSVPRGLPYFAVDFGLQGGFAHIIEDQYRFPHYFGK
EIIGGMLDLEPRLWRKGIRESFEDQRKKSLQFAQWWKPYDITKSKSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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