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Report for CCDS22936.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22936.1 Public Mus musculus 9 B3gat1 23 108 98 CCDS HistoryNCBI Gene:76898Re-query CCDS DB by CCDS ID:22936.1Re-query CCDS DB by GeneID:76898See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22936.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161431.2 ENSMUSP00000124752.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161431.2Link to Ensembl Protein Viewer:ENSMUSP00000124752.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000161431Re-query CCDS DB by Protein ID:ENSMUSP00000124752
Original member Current member EBI ENSMUST00000161115.7 ENSMUSP00000125700.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161115.7Link to Ensembl Protein Viewer:ENSMUSP00000125700.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161115Re-query CCDS DB by Protein ID:ENSMUSP00000125700
Original member Current member NCBI NM_029792.1 NP_084068.1 Accepted alive Link to Nucleotide Sequence:NM_029792.1Link to Protein Sequence:NP_084068.1Re-query CCDS DB by Nucleotide ID:NM_029792Re-query CCDS DB by Protein ID:NP_084068Link to BLAST:NP_084068.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084068.1 334 Q9CW73-1 334 100% 0 0

Chromosomal Locations for CCDS 22936.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 26751779 26751890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26755586 26756094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26756737 26757033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 26757693 26757779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGCCGAAGAGACGGGACATCCTTGCGATTGTCCTCATCGTGCTTCCCTGGACACTGCTCATCACCGTCT
GGCACCAGAGCAGCCTCGCACCTCTGCTTGCTGTGCACAAGGATGAGGGAAGTGACCCCCGCCATGAGGC
ACCACCTGGTGCGGACCCTAGGGAGTACTGCATGTCCGACCGTGACATCGTGGAAGTGGTGCGCACAGAG
TACGTGTACACGAGGCCGCCACCCTGGTCCGACACGCTGCCCACCATCCATGTGGTGACGCCCACCTACA
GTAGACCGGTGCAGAAGGCAGAGCTGACGCGAATGGCCAACACACTACTGCATGTGCCCAACCTTCACTG
GCTAGTGGTGGAGGATGCTCCACGCAGGACGCCCCTCACCGCGCGCTTGCTGCGCGACACTGGCCTCAAC
TACACACACCTGCACGTAGAGACACCACGCAACTATAAGCTGCGAGGTGATGCCCGAGACCCTCGCATCC
CACGTGGCACCATGCAGCGCAACCTGGCACTGCGCTGGCTGCGGGAGACCTTCCCACGGAACTCTACTCA
GCCAGGCGTAGTGTACTTCGCGGATGATGACAACACGTACAGTCTGGAGCTCTTTGAAGAGATGCGCAGC
ACAAGAAGGGTGTCCGTGTGGCCTGTGGCCTTTGTTGGTGGCCTTCGGTATGAGGCCCCACGGGTGAATG
GGGCAGGGAAAGTGGTTGGCTGGAAGACAGTCTTCGACCCCCACCGGCCCTTTGCAATAGACATGGCTGG
ATTTGCTGTCAACCTCCGGCTCATCTTGCAGCGAAGTCAAGCCTACTTTAAGCTACGTGGTGTGAAGGGA
GGCTACCAGGAAAGCAGTCTCCTTCGAGAACTTGTCACCCTCAATGACCTGGAGCCCAAGGCAGCAAACT
GTACCAAGATCTTGGTCTGGCATACACGAACAGAGAAGCCAGTGCTGGTCAATGAGGGGAAGAAGGGCTT
CACCGACCCCTCAGTGGAGATCTGA

Translation (334 aa):
MPKRRDILAIVLIVLPWTLLITVWHQSSLAPLLAVHKDEGSDPRHEAPPGADPREYCMSDRDIVEVVRTE
YVYTRPPPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRDTGLN
YTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSTQPGVVYFADDDNTYSLELFEEMRS
TRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPHRPFAIDMAGFAVNLRLILQRSQAYFKLRGVKG
GYQESSLLRELVTLNDLEPKAANCTKILVWHTRTEKPVLVNEGKKGFTDPSVEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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