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Report for CCDS2926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2926.1 Public Homo sapiens 3 DHFR2 24 110 108 CCDS HistoryNCBI Gene:200895Re-query CCDS DB by CCDS ID:2926.1Re-query CCDS DB by GeneID:200895See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2926.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314636.3 ENSP00000319170.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000314636.3Link to Ensembl Protein Viewer:ENSP00000319170.2Re-query CCDS DB by Nucleotide ID:ENST00000314636Re-query CCDS DB by Protein ID:ENSP00000319170
Original member Current member EBI ENST00000394221.3 ENSP00000377768.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394221.3Link to Ensembl Protein Viewer:ENSP00000377768.2Re-query CCDS DB by Nucleotide ID:ENST00000394221Re-query CCDS DB by Protein ID:ENSP00000377768
Original member Current member EBI ENST00000461173.5 ENSP00000418415.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000461173.5Link to Ensembl Protein Viewer:ENSP00000418415.1Re-query CCDS DB by Nucleotide ID:ENST00000461173Re-query CCDS DB by Protein ID:ENSP00000418415
Original member Current member EBI ENST00000619045.1 ENSP00000480823.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619045.1Link to Ensembl Protein Viewer:ENSP00000480823.1Re-query CCDS DB by Nucleotide ID:ENST00000619045Re-query CCDS DB by Protein ID:ENSP00000480823
Original member Current member NCBI NM_001195643.2 NP_001182572.1 Accepted alive Link to Nucleotide Sequence:NM_001195643.2Link to Protein Sequence:NP_001182572.1Re-query CCDS DB by Nucleotide ID:NM_001195643Re-query CCDS DB by Protein ID:NP_001182572Link to BLAST:NP_001182572.1
Original member Current member NCBI NM_176815.5 NP_789785.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_176815.5Link to Protein Sequence:NP_789785.1Re-query CCDS DB by Nucleotide ID:NM_176815Re-query CCDS DB by Protein ID:NP_789785Link to BLAST:NP_789785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182572.1 187 Q86XF0 187 100% 0 0
NP_789785.1 187 Q86XF0 187 100% 0 0

Chromosomal Locations for CCDS 2926.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 94060948 94061511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGTTTCTTTTGCTAAACTGCATCGTCGCTGTGTCCCAAAACATGGGCATCGGCAAGAACGGGGACCTGC
CCAGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACAACTTCTTCAGTAGAGGGTAA
ACAGAATCTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCTGAGAAGAATCGACCTTTAAAGGAT
AGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAGAAGTT
TGGATGATGCCTTAAAACTTACTGAACGACCAGAATTAGCAAATAAAGTAGACATGATTTGGATAGTTGG
TGGCAGTTCTGTTTATAAGGAAGCCATGAATCACCTAGGCCATCTTAAACTATTTGTGACAAGGATCATG
CAGGACTTTGAAAGTGACACGTTTTTTTCAGAAATTGACTTGGAGAAATATAAACTTCTGCCTGAATACC
CAGGTGTTCTCTCTGATGTCCAGGAGGGGAAACACATCAAGTACAAATTTGAAGTATGTGAGAAGGATGA
TTAA

Translation (187 aa):
MFLLLNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKD
RINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSSVYKEAMNHLGHLKLFVTRIM
QDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKFEVCEKDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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