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Report for CCDS344.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
344.1 Public Homo sapiens 1 HCRTR1 24 110 108 CCDS HistoryNCBI Gene:3061Re-query CCDS DB by CCDS ID:344.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 344.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373706.9 ENSP00000362810.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373706.9Link to Ensembl Protein Viewer:ENSP00000362810.5Re-query CCDS DB by Nucleotide ID:ENST00000373706Re-query CCDS DB by Protein ID:ENSP00000362810
Original member Current member EBI ENST00000403528.7 ENSP00000384387.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000403528.7Link to Ensembl Protein Viewer:ENSP00000384387.2Re-query CCDS DB by Nucleotide ID:ENST00000403528Re-query CCDS DB by Protein ID:ENSP00000384387
Original member Current member NCBI NM_001525.3 NP_001516.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001525.3Link to Protein Sequence:NP_001516.2Re-query CCDS DB by Nucleotide ID:NM_001525Re-query CCDS DB by Protein ID:NP_001516Link to BLAST:NP_001516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001516.2 425 O43613 425 100% 0 0

Chromosomal Locations for CCDS 344.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31619193 31619391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31619532 31619710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31620843 31621086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31621477 31621592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31623523 31623749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31624997 31625118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31626790 31626980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1278 nt):
ATGGAGCCCTCAGCCACCCCAGGGGCCCAGATGGGGGTCCCCCCTGGCAGCAGAGAGCCGTCCCCTGTGC
CTCCAGACTATGAAGATGAGTTTCTCCGCTATCTGTGGCGCGATTATCTGTACCCAAAACAGTATGAGTG
GGTCCTCATCGCAGCCTATGTGGCTGTGTTCGTCGTGGCCCTGGTGGGCAACACGCTGGTCTGCCTGGCC
GTGTGGCGGAACCACCACATGAGGACAGTCACCAACTACTTCATTGTCAACCTGTCCCTGGCTGACGTTC
TGGTGACTGCTATCTGCCTGCCGGCCAGCCTGCTGGTGGACATCACTGAGTCCTGGCTGTTCGGCCATGC
CCTCTGCAAGGTCATCCCCTATCTACAGGCTGTGTCCGTGTCAGTGGCAGTGCTAACTCTCAGCTTCATC
GCCCTGGACCGCTGGTATGCCATCTGCCACCCACTATTGTTCAAGAGCACAGCCCGGCGGGCCCGTGGCT
CCATCCTGGGCATCTGGGCTGTGTCGCTGGCCATCATGGTGCCCCAGGCTGCAGTCATGGAATGCAGCAG
TGTGCTGCCTGAGCTAGCCAACCGCACACGGCTCTTCTCAGTCTGTGATGAACGCTGGGCAGATGACCTC
TATCCCAAGATCTACCACAGTTGCTTCTTTATTGTCACCTACCTGGCCCCACTGGGCCTCATGGCCATGG
CCTATTTCCAGATATTCCGCAAGCTCTGGGGCCGCCAGATCCCCGGCACCACCTCAGCACTGGTGCGGAA
CTGGAAGCGCCCCTCAGACCAGCTGGGGGACCTGGAGCAGGGCCTGAGTGGAGAGCCCCAGCCCCGGGCC
CGCGCCTTCCTGGCTGAAGTGAAGCAGATGCGTGCACGGAGGAAGACAGCCAAGATGCTGATGGTGGTGC
TGCTGGTCTTCGCCCTCTGCTACCTGCCCATCAGCGTCCTCAATGTCCTTAAGAGGGTGTTCGGGATGTT
CCGCCAAGCCAGTGACCGCGAAGCTGTCTACGCCTGCTTCACCTTCTCCCACTGGCTGGTGTACGCCAAC
AGCGCTGCCAACCCCATCATCTACAACTTCCTCAGTGGCAAATTCCGGGAGCAGTTTAAGGCTGCCTTCT
CCTGCTGCCTGCCTGGCCTGGGTCCCTGCGGCTCTCTGAAGGCCCCTAGTCCCCGCTCCTCTGCCAGCCA
CAAGTCCTTGTCCTTGCAGAGCCGATGCTCCATCTCCAAAATCTCTGAGCATGTGGTGCTCACCAGCGTC
ACCACAGTGCTGCCCTGA

Translation (425 aa):
MEPSATPGAQMGVPPGSREPSPVPPDYEDEFLRYLWRDYLYPKQYEWVLIAAYVAVFVVALVGNTLVCLA
VWRNHHMRTVTNYFIVNLSLADVLVTAICLPASLLVDITESWLFGHALCKVIPYLQAVSVSVAVLTLSFI
ALDRWYAICHPLLFKSTARRARGSILGIWAVSLAIMVPQAAVMECSSVLPELANRTRLFSVCDERWADDL
YPKIYHSCFFIVTYLAPLGLMAMAYFQIFRKLWGRQIPGTTSALVRNWKRPSDQLGDLEQGLSGEPQPRA
RAFLAEVKQMRARRKTAKMLMVVLLVFALCYLPISVLNVLKRVFGMFRQASDREAVYACFTFSHWLVYAN
SAANPIIYNFLSGKFREQFKAAFSCCLPGLGPCGSLKAPSPRSSASHKSLSLQSRCSISKISEHVVLTSV
TTVLP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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