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Report for CCDS19067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19067.1 Public Mus musculus 5 Tmbim7 23 108 98 CCDS HistoryNCBI Gene:75010Re-query CCDS DB by CCDS ID:19067.1Re-query CCDS DB by GeneID:75010See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19067.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014673.8 ENSMUSP00000014673.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014673.8Link to Ensembl Protein Viewer:ENSMUSP00000014673.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000014673Re-query CCDS DB by Protein ID:ENSMUSP00000014673
Original member Current member NCBI NM_029141.4 NP_083417.1 Accepted alive Link to Nucleotide Sequence:NM_029141.4Link to Protein Sequence:NP_083417.1Re-query CCDS DB by Nucleotide ID:NM_029141Re-query CCDS DB by Protein ID:NP_083417Link to BLAST:NP_083417.1

Chromosomal Locations for CCDS 19067.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 3657525 3657526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3661759 3662033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3664257 3664335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3665280 3665333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3666795 3666885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3669915 3669952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3670034 3670121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3673098 3673187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3676279 3676326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 3679017 3679160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGAAAATAGACTTGGAGGTCAGTGAGCCAGTCAACTTTAGCTCTGGAGATCATCAACATCTGGTTCATA
CAGCAGCCATTAAAGGTAACACTGGCAGACTGGATCAGCCCTTCACAGCTTCATCTGGAGACAGGGTACA
AGAAGCCGTACAATACTCACATCCAAGGAATAGAGATGGAGCAAATACCTATGCAGTACAAGTTTCTGAG
GATGTTACTCCCTCAAATGAGACTGTAAATCAATCCATTCCCTTTGAAAACACGTCTATTCGTAATGATT
TCATTATGAAAGTGTTTGTCGTTCTGTCCATTCAGCTGTTCATCACTGCAGTGATTATCGGCATCTTTGT
TTTCTGCGAACCTGTAAGAAAGTGGGTCATCGCCAAGCCCTGGTTCCTGTATGCACTCCTCCCAGCAGTT
ATGATTCTGATCTTTGTACTCGCTTGCTGCAGGGATATCCGGCGCCAAGTGCCCGCAAACTACATTCTCC
TGGCGTTCTTTACCATTCTGGAAGGCCTGCTGCTCGGAAGCTTGTCAGTCTTCTACAGAGCAGAAGAGAT
ACTATGGGCCGCAGGAGCCACCACTATGGTGACACTAGTGCTAACTTTGTTTGCGCTACAAACAAAATGG
GATTTTACCCTGCTAAATGGAGTGATGTTTGTTTTCACCAGTGTGCTACTTATCTACGGGATTATTGCAC
TTGTGATTCGATCATACTGGTTGCATCTGGTGTACTCAGCGCTTGGAACATTGCTCTTCTCCATATACCT
GGTGATGGACGTGCAAATGATGGTGGGGGGGCGCTACCATTATGAGATAAACCCCGAAGAGTACATTTTT
GCTGCTCTGAACATCTACGTGGACATCATCAGCCTTTTCATTTTTATTTTGGACCTGATTGGACGATAG

Translation (302 aa):
MKIDLEVSEPVNFSSGDHQHLVHTAAIKGNTGRLDQPFTASSGDRVQEAVQYSHPRNRDGANTYAVQVSE
DVTPSNETVNQSIPFENTSIRNDFIMKVFVVLSIQLFITAVIIGIFVFCEPVRKWVIAKPWFLYALLPAV
MILIFVLACCRDIRRQVPANYILLAFFTILEGLLLGSLSVFYRAEEILWAAGATTMVTLVLTLFALQTKW
DFTLLNGVMFVFTSVLLIYGIIALVIRSYWLHLVYSALGTLLFSIYLVMDVQMMVGGRYHYEINPEEYIF
AALNIYVDIISLFIFILDLIGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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