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Report for CCDS23326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23326.1 Public Mus musculus 9 Polr2m 23 108 98 CCDS HistoryNCBI Gene:28015Re-query CCDS DB by CCDS ID:23326.1Re-query CCDS DB by GeneID:28015See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034720.11 ENSMUSP00000034720.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034720.11Link to Ensembl Protein Viewer:ENSMUSP00000034720.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034720Re-query CCDS DB by Protein ID:ENSMUSP00000034720
Original member Current member NCBI NM_178602.3 NP_848717.1 Accepted alive Link to Nucleotide Sequence:NM_178602.3Link to Protein Sequence:NP_848717.1Re-query CCDS DB by Nucleotide ID:NM_178602Re-query CCDS DB by Protein ID:NP_848717Link to BLAST:NP_848717.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848717.1 366 Q6P6I6-1 366 100% 0 0

Chromosomal Locations for CCDS 23326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 71479397 71479540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71481342 71481546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71483167 71483805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71485684 71485796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGTTCTCGCTGCCCCGCGGCTTCGAGCCCCCAGCTCCCGAGGACTTGGGGCGGCAGAGTTCGGCGGAGC
TGCGGGAGAGGTTGAGGCGCCAGGAGAGACTTTTGCGCAACGAAAAATTCATTTGCAAATTGCCCGACAA
AGGTAAAAAGATCTCAGACACAGTTGCCAAACTGAAAGCTGCCATTTCAGAACGTGAAGAGGTTAGAGGG
AGAAGTGAACTGTTTCATCCTGTTAGTGTAGACTGTAAGCTAAGGCAAAAAGCAACCACAAGAGCTGACA
CCGATGTAGACAAGGCCCAGAGTTCTGACCTGATGCTTGATACTTCATCATTAGATCCTGACTGTTCCTC
AATAGACATTAAGTCATCTAAATCAACCTCAGAAACACAGGGACCTACACATCTCACTCACAGAGGCAAT
GAAGAGACTTTGGAGGCTGGCTACACAGTAAACAGCAGCCCAGCTGCCCACATCCGAGCCCGGGCGCCCT
CATCCGAAGTTAAGGAGCATCTCCCCCAGCACTCTGTTTCAAGTCAAGAGGAAGAGATCTCCAGCAGCAT
CGACAGTCTCTTCATCACTAAATTGCAAAAAATCACAATTGCAGACCAGAGTGAACCCTCAGAAGAAAAC
ACCAGCACTGAGAACTTTCCAGAACTGCAGAGTGAGACTCCTAAGAAGCCTCATTACATGAAAGTGCTAG
AAATGCGAGCCAGAAACCCAGTGCCCCCTCCTCATAAGTTTAAGACCAATGTGTTACCCACACAACAGAG
TGACTCACCAAGTCATTGTCAGAGGGGCCAGTCTCCTGCTTCCTCAGAAGAGCAGCGACGAAGGGCTAGG
CAGCATCTTGATGATATCACAGCAGCGCGCCTCCTTCCGCTCCACCACCTGCCTGCACAGCTGCTTTCCA
TAGAAGAGTCGCTGGCCCTGCAGAGGGAGCAGAAGCAGAATTATGAGGAGATGCAGGCAAAGCTCGCAGC
ACAGAAACTGGCCGAGAGACTGAATATTAAAATGCAGAGCTACAATCCAGAAGGGGAGTCTTCAGGGAGA
TACCGAGAAGTGAGGGACGAAGCTGATGCCCAGTCCTCGGATGAGTGCTGA

Translation (366 aa):
MFSLPRGFEPPAPEDLGRQSSAELRERLRRQERLLRNEKFICKLPDKGKKISDTVAKLKAAISEREEVRG
RSELFHPVSVDCKLRQKATTRADTDVDKAQSSDLMLDTSSLDPDCSSIDIKSSKSTSETQGPTHLTHRGN
EETLEAGYTVNSSPAAHIRARAPSSEVKEHLPQHSVSSQEEEISSSIDSLFITKLQKITIADQSEPSEEN
TSTENFPELQSETPKKPHYMKVLEMRARNPVPPPHKFKTNVLPTQQSDSPSHCQRGQSPASSEEQRRRAR
QHLDDITAARLLPLHHLPAQLLSIEESLALQREQKQNYEEMQAKLAAQKLAERLNIKMQSYNPEGESSGR
YREVRDEADAQSSDEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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