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Report for CCDS50092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50092.1 Public Mus musculus 17 2300002M23Rik 23 108 98 CCDS HistoryNCBI Gene:69542Re-query CCDS DB by CCDS ID:50092.1Re-query CCDS DB by GeneID:69542See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50092.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044326.4 ENSMUSP00000038043.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044326.4Link to Ensembl Protein Viewer:ENSMUSP00000038043.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000044326Re-query CCDS DB by Protein ID:ENSMUSP00000038043
Original member Current member NCBI NM_175148.3 NP_780357.1 Accepted alive Link to Nucleotide Sequence:NM_175148.3Link to Protein Sequence:NP_780357.1Re-query CCDS DB by Nucleotide ID:NM_175148Re-query CCDS DB by Protein ID:NP_780357Link to BLAST:NP_780357.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780357.1 349 Q8BM15 349 100% 0 0

Chromosomal Locations for CCDS 50092.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35567554 35567620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35567834 35568816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1050 nt):
ATGCAGAGCCACGCAGGTGGGAGCCGGGCTCCCCTGGGCTTGCTCCTGATCTGTCTGTGCCTGCCAGGTC
TTTTTGCACGGAGCACTGGGGCACCAGAGGAGAAAGCCTCCCCACATTCGGGACAACCTTCCTTCACCAG
CCTCCTTAACCCTGGACAGCCTCAGCCCAAGCCAGACCCTGTGAATAATGAGTTACTAGGAGTTCTTCCC
AGGCTCAGCGAATCTCCACAAGATGGTGCTCTACCTGAGGGCGGCTCTGAGGTGCCCAACGGGCCTCCCT
TCTGGGGGCCGCCCCCCATGGAGTCCTGGCCCTCAGAGGACCCTCAGCAAGGGATGGCTGCTGTTGCTGA
GGACCAGTTAGAGCAAATGCTGCCAGAAGCCCTGCCATACCTTTCCAGAGGCGGTCGTCTGCCTGAGGCT
TCCTCTGCACGGCTCAGGCAACCTTCACTAGCGGCTTCCTACCCTCAGGACTCCGAGGCTGGACTGCAGC
CTGGTTCCAGTTCACTGGAAACTGAGGCAGAAGCCTTTGCTCGGAGCCCATTCTGGTTTCTCATCCACAA
GCTTCTGCCTGGCTCATCTGGGAGGATCCTAAGGCCTGGAACATCCTGGGGAAGTGGAGGGGCTGGAACT
GGGTGGGGAACAAGACCCATGCCATATCCTTCTGGAATATGGGGTAGCAATGGTTTAGTATCAGGTACTA
GTTTGGGGGGTAGGGGTCCTTACCCAGTAAGAATCTGGGGGAGAAATGGTTGGTACCCATTAAGGATCTT
GGGGGGTAATGGTCGGTACCCCCCAGTAGGGACCTGGGGGGGTTATGGTCAGTACCCCCCAGTAGGGACC
TGGGGCGGTTATGGTCAGTACCCCCCAGTAGGGCCCTGGGGCGGTTATGGTCAGTACCCCCCAGTAGGGA
CCTGGGGGGCCAATTGCCAGTATCCAGCAGGCAGCCGGAGGCCCAATTGTCGATATCCAGCAGGTAGCTG
GGGAACTAAAGGTCAGAATCGGCTTCCCCCAGGAGCCAAACGTCCTGGCTCTTCTGGGATCACCCCCTAA

Translation (349 aa):
MQSHAGGSRAPLGLLLICLCLPGLFARSTGAPEEKASPHSGQPSFTSLLNPGQPQPKPDPVNNELLGVLP
RLSESPQDGALPEGGSEVPNGPPFWGPPPMESWPSEDPQQGMAAVAEDQLEQMLPEALPYLSRGGRLPEA
SSARLRQPSLAASYPQDSEAGLQPGSSSLETEAEAFARSPFWFLIHKLLPGSSGRILRPGTSWGSGGAGT
GWGTRPMPYPSGIWGSNGLVSGTSLGGRGPYPVRIWGRNGWYPLRILGGNGRYPPVGTWGGYGQYPPVGT
WGGYGQYPPVGPWGGYGQYPPVGTWGANCQYPAGSRRPNCRYPAGSWGTKGQNRLPPGAKRPGSSGITP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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