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Report for CCDS17058.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17058.1 Public Mus musculus 2 Zswim3 23 108 98 CCDS HistoryNCBI Gene:67538Re-query CCDS DB by CCDS ID:17058.1Re-query CCDS DB by GeneID:67538See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17058.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052107.4 ENSMUSP00000050970.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052107.4Link to Ensembl Protein Viewer:ENSMUSP00000050970.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000052107Re-query CCDS DB by Protein ID:ENSMUSP00000050970
Original member Current member NCBI NM_178375.2 NP_848462.1 Accepted alive Link to Nucleotide Sequence:NM_178375.2Link to Protein Sequence:NP_848462.1Re-query CCDS DB by Nucleotide ID:NM_178375Re-query CCDS DB by Protein ID:NP_848462Link to BLAST:NP_848462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848462.1 695 Q8CFL8 695 100% 0 0

Chromosomal Locations for CCDS 17058.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164805277 164805431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164819757 164821689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2088 nt):
ATGGAGCTAGGCAGCTGCTTTAAGACCTACGAGGACTTCAAGGAGTGTTTCAGCGCCTACAAAAAGGAGA
CC
AGGTGCTCCTTCATTGTCAGGGACTGCATCTCCGTCCGCTTCCATAACCTCAACAACGGCACCTCTTT
C
CGCGAGGATATCCTATATGTGCAGGTGAAATTTGTCTGTATTCGGACGCAGTCAAACAGGAAGAAAACT
CGG
AAGGTGGACAGGTGTCCAGCGTATCTGCTGCTGCAATACAACGAGACTCTAGATAGACTGTTTATCA
GT
GAGTTGAATACCCAGCACATTCATGCTGACTCTAATGCTTCTGGAGGAATCCCTGCTAGCAAGCCTCA
G
GCAATATGTCTACACAAACTCCCGCCGGTGCAGCTCAGCATCAGGAAAGACCTTGATACAGCAGAGAAG
CCC
TCAGTAGAGCCGTCATTTTGCCTCGATAAGATACACAAGCCCTCAAATCCAGAACAGGAGGGCATCA
GT
CCTTCTGATATGGCCAAGATAGCAAAAGTGATGAAGAACTTTCTTACCGTGGACGAGGGCTCAATGGC
C
TCCTTCAGTGTGGGCACCAGCCAAGACCTAGACCGACTCAGCTTCCAGAGCAGCAAGATGAGTGACCTG
TTC
GCCCGATTCCCAGAGACACTCTTGCTGCACCGGGTGGAAAACAGCCAGGGCCATATTCTGTATGCTT
TC
TTGGTGGAGAACAAGGAGCGAGAGAGTCGAGTGGTGCACTTCGCTGTGCTCAAGGCTGAGACAGCGCC
T
TCTGTGGCCAAGATGCTCAATATCTTTACAGAATTCAACTCTGATTGGCCCAAGGTCAAGATGGTCTTT
GTG
GACCCTTCATTCCCTCACCGAGCGATCTTACAGGAGATCTTCCCCTCTGCCCGCACTCTCCTCTCTA
TC
TACCACACCACTCGTCTCTTGGAGAAGAAGTTACACCAGAGTTCAGTAAATGCGTCTTTTAAAAGGCT
C
ATGAAAGAAGCTCTGCGGGAAGCTGTGTTTGTCTCTTCTGATGCAAGCCTAAAAAATCTCTGTGAGATG
TCC
CAAGTCCTACTAGATGAGGAACTCTTCAGTTTCCTCCAGGCCCATTGGTTCTCCTGTGAACTGCTGT
GG
TACATACATGTGAGGAAGGGCCTGCATGCATGTAACACCTACATGGACAGCCTAGACATAGTCACCAG
C
AAGGTGTCAAGCCTCTTTCGGGAACAGCGGTCTCTGCTGGACTGCATCCTTCACTTTGTGGATTACATA
GAC
TTCTTTAATACCAAAGGTCTGAAGAGCTTGCCCACAAATGCTCCCAAGTTAAGGAGAACTCGGCTCC
CA
AGCACGCCTCCAAGGCCCAAGAAGCCTTTTAGAATTTGTGGTGGGGGTGACACCAGGCTCCCTGTGGA
A
GAGGTAGAAGAGACAAAGGCAGACTCAGCACAGTCTCAGTTGCCACAGCCCCAGGATCAGTCCTCCAAG
GCT
GGCATGCTAGACATCTTGCACCAGAGTGGCTCTGAACTAGCCTACAAGTTGTGTCATAATGAGTGGG
AG
GTGGTACAGAATTCCACCCACCTGGTAGACGAGGCCGGCTCCTCAGTGGCTGTTCAGCTGCTAGAGAA
C
TCACACCAGGTGAGCAAAGATGGCTGTAGCTGCAGCTGCTCCTTTCAACAGTGCTACCATCTGCCATGC
CGC
CACATTTTGGCTCTGTTGCATACCAGCCAGCAGCCAGTAGGGGAAGCCATGGTGTGCTGCCGGTGGC
AG
AAGAAATACCAGCACCTCCTTGACCCCAATGGGGAGCTGCAAGACCGTGGAATCATCCCAAACACAGA
T
CAGCCTGAAAAGCAAGGTCAGAACCACATGATTCGGGACCTAAGCAGGGAGCTGGCAAACCTGCTGATG
CAG
ACCGAGGGGCCAGAGCTGGAGGAGCGCTGCTCCACCCTGCGCAAGATTGTGGACATCTGGGCAGACC
CC
TATCAGCTGCCTGAGTCCAGTCAGCAGCCAGTTGACTTCAGAGACGTGGGCTGCCTCCCTTTCCTCTG
G
GGAAAGCTAGAGGAAGCAGACAGCCCCCCTCTTGCTGAAGCCATGGTTCATGATTGA


Translation (695 aa):
MELGSCFKTYEDFKECFSAYKKETRCSFIVRDCISVRFHNLNNGTSFREDILYVQVKFVCIRTQSNRKKT
R
KVDRCPAYLLLQYNETLDRLFISELNTQHIHADSNASGGIPASKPQAICLHKLPPVQLSIRKDLDTAEK
P
SVEPSFCLDKIHKPSNPEQEGISPSDMAKIAKVMKNFLTVDEGSMASFSVGTSQDLDRLSFQSSKMSDL
F
ARFPETLLLHRVENSQGHILYAFLVENKERESRVVHFAVLKAETAPSVAKMLNIFTEFNSDWPKVKMVF
V
DPSFPHRAILQEIFPSARTLLSIYHTTRLLEKKLHQSSVNASFKRLMKEALREAVFVSSDASLKNLCEM
S
QVLLDEELFSFLQAHWFSCELLWYIHVRKGLHACNTYMDSLDIVTSKVSSLFREQRSLLDCILHFVDYI
D
FFNTKGLKSLPTNAPKLRRTRLPSTPPRPKKPFRICGGGDTRLPVEEVEETKADSAQSQLPQPQDQSSK
A
GMLDILHQSGSELAYKLCHNEWEVVQNSTHLVDEAGSSVAVQLLENSHQVSKDGCSCSCSFQQCYHLPC
R
HILALLHTSQQPVGEAMVCCRWQKKYQHLLDPNGELQDRGIIPNTDQPEKQGQNHMIRDLSRELANLLM
Q
TEGPELEERCSTLRKIVDIWADPYQLPESSQQPVDFRDVGCLPFLWGKLEEADSPPLAEAMVHD




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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