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Report for CCDS88008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88008.1 Public Mus musculus 10 Lims1 23 108 98 CCDS HistoryNCBI Gene:110829Re-query CCDS DB by CCDS ID:88008.1Re-query CCDS DB by GeneID:110829See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238939.1 ENSMUSP00000158997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238939.1Link to Ensembl Protein Viewer:ENSMUSP00000158997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238939Re-query CCDS DB by Protein ID:ENSMUSP00000158997
Original member Current member NCBI NM_201242.1 NP_957694.1 Accepted alive Link to Nucleotide Sequence:NM_201242.1Link to Protein Sequence:NP_957694.1Re-query CCDS DB by Nucleotide ID:NM_201242Re-query CCDS DB by Protein ID:NP_957694Link to BLAST:NP_957694.1

Chromosomal Locations for CCDS 88008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 58371593 58371699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58399021 58399180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58408070 58408136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58409560 58409680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58410053 58410202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58412403 58412553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58413973 58414065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58416634 58416682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58418399 58418474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 58421454 58421568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGACCACACTACAGCTTAAGGAGCTTTCACAGTCGGGCCTCTACCGGAGAAGGCGAGAGCGTCCTGAGA
GTCTGAGAGTCAATGGGCACGCAGAGGAAGAGCTGAGCAACATGGCCAATGCCTTGGCCAGTGCCACGTG
TGAGCGCTGCAAGGGAGGCTTTGCGCCTGCTGAGAAGATCGTGAACAGTAATGGTGAGCTGTACCACGAA
CAGTGCTTCGTATGTGCTCAGTGCTTCCAGCAGTTCCCAGAAGGACTCTTTTATGAGTTTGAAGGAAGGA
AGTACTGTGAGCATGATTTCCAAATGCTCTTTGCTCCCTGCTGCCACCAATGTGGTGAATTCATCATTGG
CAGGGTTATCAAAGCCATGAACAACAGCTGGCATCCTGAGTGCTTCCGATGTGACCTCTGCCAGGAAGTG
CTGGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACACCTATGTCGCCCATGTCATAATCGTGAAAAAG
CCAGAGGCCTTGGAAAATACATCTGCCAGAAATGCCATGCCATCATTGATGAACAGCCTCTGATCTTCAA
GAACGACCCTTACCATCCAGACCACTTCAACTGTGCCAACTGCGGGAAGGAGCTAACTGCTGATGCTCGG
GAGCTGAAAGGGGAGCTATACTGTCTGCCATGCCATGATAAGATGGGGGTCCCTATCTGTGGCGCCTGCA
GGAGGCCCATTGAAGGGCGAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGGAGCATTTTGTTTGTGC
CAAATGTGAAAAACCATTTCTTGGGCATCGCCATTATGAGAGGAAGGGCTTGGCCTACTGTGAAACTCAC
TATAATCAGCTGTTTGGTGATGTTTGTTTCCATTGCAACCGTGTCATAGAAGGTGATGTGGTCTCTGCTC
TCAACAAGGCCTGGTGTGTGAGCTGCTTTGCCTGCTCCACCTGCAATACCAAACTCACACTCAAGAATAA
ATTTGTGGAATTTGACATGAAGCCAGTCTGTAAGAAGTGCTACGAGAAATTTCCTTTGGAGCTGAAGAAA
AGACTTAAGAAACTATCTGAGACCTTAGGAAGGAAATAA

Translation (362 aa):
MTTLQLKELSQSGLYRRRRERPESLRVNGHAEEELSNMANALASATCERCKGGFAPAEKIVNSNGELYHE
QCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQMLFAPCCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEV
LADIGFVKNAGRHLCRPCHNREKARGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTADAR
ELKGELYCLPCHDKMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETH
YNQLFGDVCFHCNRVIEGDVVSALNKAWCVSCFACSTCNTKLTLKNKFVEFDMKPVCKKCYEKFPLELKK
RLKKLSETLGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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