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Report for CCDS13271.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13271.1 Public Homo sapiens 20 EPB41L1 24 110 108 CCDS HistoryNCBI Gene:2036Re-query CCDS DB by CCDS ID:13271.1Re-query CCDS DB by GeneID:2036See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13271.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338074.7 ENSP00000337168.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338074.7Link to Ensembl Protein Viewer:ENSP00000337168.2Re-query CCDS DB by Nucleotide ID:ENST00000338074Re-query CCDS DB by Protein ID:ENSP00000337168
Original member Current member NCBI NM_012156.2 NP_036288.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012156.2Link to Protein Sequence:NP_036288.2Re-query CCDS DB by Nucleotide ID:NM_012156Re-query CCDS DB by Protein ID:NP_036288Link to BLAST:NP_036288.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036288.2 881 Q9H4G0-1 881 100% 0 0

Chromosomal Locations for CCDS 13271.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36173778 36173954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36175551 36175715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36177952 36178056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36178630 36178672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36182272 36182347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36185117 36185335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36187676 36187763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36188347 36188499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36190277 36190374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36190622 36190797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36194212 36194360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36195329 36195364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36197859 36198041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36209488 36209898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36212272 36212376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36214357 36214440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36218876 36218962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36219761 36219844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36221864 36221944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36222278 36222394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36229332 36229340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2646 nt):
ATGACAACAGAGACAGGCCCCGACTCTGAGGTGAAGAAAGCTCAGGAGGAGGCCCCGCAGCAGCCCGAGG
CTGCTGCCGCTGTGACCACCCCTGTGACCCCTGCAGGCCACGGCCACCCAGAGGCCAACTCCAATGAGAA
GCATCCATCCCAGCAGGACACGCGGCCTGCTGAACAGAGCCTAGACATGGAGGAGAAGGACTACAGTGAG
GCCGATGGCCTTTCGGAGAGGACCACGCCCAGCAAGGCCCAGAAATCGCCCCAGAAGATTGCCAAGAAAT
ACAAGAGTGCCATCTGCCGGGTCACTCTGCTTGATGCCTCGGAGTATGAGTGTGAGGTGGAGAAACATGG
CCGGGGCCAGGTGCTGTTTGACCTGGTCTGTGAACACCTCAACCTCCTAGAGAAGGACTACTTCGGCCTG
ACCTTCTGTGATGCTGACAGCCAGAAGAACTGGCTGGACCCCTCCAAGGAGATCAAGAAGCAGATCCGGA
GTAGCCCCTGGAATTTTGCCTTCACAGTCAAGTTCTACCCGCCTGATCCTGCCCAGCTGACAGAAGACAT
CACAAGATACTACCTGTGCCTGCAGCTGCGGGCAGACATCATCACGGGCCGGCTGCCATGCTCCTTTGTC
ACGCATGCCCTACTGGGCTCCTACGCTGTGCAGGCTGAGCTGGGTGACTATGATGCTGAGGAGCATGTGG
GCAACTATGTCAGCGAGCTCCGCTTCGCCCCTAACCAGACCCGGGAGCTGGAGGAGAGGATCATGGAGCT
GCATAAGACATATAGGGGGATGACCCCGGGAGAAGCAGAAATCCACTTCTTAGAGAATGCCAAGAAGCTT
TCCATGTACGGAGTAGACCTGCACCATGCCAAGGACTCTGAGGGCATCGACATCATGTTAGGCGTTTGTG
CCAATGGCCTGCTCATCTACCGGGACCGGCTGAGAATCAACCGCTTTGCCTGGCCCAAGATCCTCAAGAT
CTCCTACAAGAGGAGTAACTTCTATATCAAGATCCGGCCTGGGGAGTATGAGCAATTTGAGAGCACAATT
GGCTTTAAGCTCCCAAACCACCGGTCAGCCAAGAGACTGTGGAAGGTCTGCATCGAGCATCATACATTCT
TCCGGCTGGTGTCCCCTGAGCCCCCACCCAAGGGCTTCCTGGTGATGGGCTCCAAGTTCCGGTACAGTGG
GAGGACCCAGGCACAGACTCGCCAGGCCAGCGCCCTCATTGACCGGCCTGCACCCTTCTTTGAGCGTTCT
TCCAGCAAACGGTACACCATGTCCCGCAGCCTTGATGGAGCAGAGTTCTCCCGCCCAGCCTCGGTCAGCG
AGAACCATGATGCAGGGCCTGACGGTGACAAGCGGGATGAGGATGGCGAGTCTGGGGGGCAACGGTCAGA
GGCTGAGGAGGGAGAGGTCAGGACTCCAACCAAGATCAAGGAGCTAAAGCCGGAGCAGGAAACCACGCCG
AGACACAAGCAGGAGTTCTTAGACAAGCCAGAAGATGTCTTGCTGAAGCACCAGGCCAGCATCAATGAGC
TCAAAAGGACCCTGAAGGAGCCCAACAGCAAACTCATCCACCGGGATCGAGACTGGGAACGGGAGCGCAG
GCTGCCCTCCTCCCCCGCCTCCCCCTCCCCCAAGGGCACCCCTGAGAAAGCCAATGAGAGAGCAGGGCTG
AGGGAGGGCTCCGAGGAGAAAGTCAAACCACCACGTCCCCGGGCCCCAGAGAGTGACACAGGCGATGAGG
ACCAGGACCAGGAGAGGGACACGGTGTTCCTGAAGGACAACCACCTGGCCATTGAGCGCAAGTGCTCCAG
CATCACGGTCAGCTCTACGTCTAGCCTGGAGGCTGAGGTGGACTTCACGGTCATTGGTGACTACCATGGC
AGCGCCTTCGAAGACTTCTCCCGCAGCCTGCCTGAGCTCGACCGGGACAAAAGCGACTCGGACACTGAGG
GCCTGCTGTTCTCCCGGGATCTCAACAAGGGGGCCCCCAGCCAGGATGATGAGTCTGGGGGCATTGAGGA
CAGCCCGGATCGAGGGGCCTGCTCCACCCCGGATATGCCCCAGTTTGAGCCCGTGAAAACAGAAACCATG
ACTGTCAGCAGTCTGGCCATTAGAAAGAAGATTGAGCCGGAGGCCGTACTGCAGACCAGAGTCTCCGCTA
TGGATAACACCCAGCAGGTTGATGGGAGTGCCTCAGTGGGGAGGGAGTTCATAGCAACCACTCCCTCCAT
CACCACGGAGACCATATCGACCACCATGGAGAACAGTCTCAAGTCCGGGAAGGGGGCAGCTGCCATGATC
CCAGGCCCACAGACGGTGGCCACGGAAATCCGTTCTCTTTCTCCGATCATCGGGAAAGATGTCCTCACCA
GCACCTACGGCGCCACTGCGGAAACCCTCTCAACCTCCACCACCACCCATGTCACCAAAACTGTGAAAGG
AGGGTTTTCTGAGACAAGGATCGAGAAGCGAATCATCATTACTGGGGATGAAGATGTCGATCAAGACCAG
GCCCTGGCTTTGGCCATCAAGGAGGCCAAACTGCAGCATCCTGATATGCTGGTAACCAAAGCTGTCGTAT
ACAGAGAAACAGACCCATCCCCAGAGGAGAGGGACAAGAAGCCACAGGAATCCTGA

Translation (881 aa):
MTTETGPDSEVKKAQEEAPQQPEAAAAVTTPVTPAGHGHPEANSNEKHPSQQDTRPAEQSLDMEEKDYSE
ADGLSERTTPSKAQKSPQKIAKKYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGL
TFCDADSQKNWLDPSKEIKKQIRSSPWNFAFTVKFYPPDPAQLTEDITRYYLCLQLRADIITGRLPCSFV
THALLGSYAVQAELGDYDAEEHVGNYVSELRFAPNQTRELEERIMELHKTYRGMTPGEAEIHFLENAKKL
SMYGVDLHHAKDSEGIDIMLGVCANGLLIYRDRLRINRFAWPKILKISYKRSNFYIKIRPGEYEQFESTI
GFKLPNHRSAKRLWKVCIEHHTFFRLVSPEPPPKGFLVMGSKFRYSGRTQAQTRQASALIDRPAPFFERS
SSKRYTMSRSLDGAEFSRPASVSENHDAGPDGDKRDEDGESGGQRSEAEEGEVRTPTKIKELKPEQETTP
RHKQEFLDKPEDVLLKHQASINELKRTLKEPNSKLIHRDRDWERERRLPSSPASPSPKGTPEKANERAGL
REGSEEKVKPPRPRAPESDTGDEDQDQERDTVFLKDNHLAIERKCSSITVSSTSSLEAEVDFTVIGDYHG
SAFEDFSRSLPELDRDKSDSDTEGLLFSRDLNKGAPSQDDESGGIEDSPDRGACSTPDMPQFEPVKTETM
TVSSLAIRKKIEPEAVLQTRVSAMDNTQQVDGSASVGREFIATTPSITTETISTTMENSLKSGKGAAAMI
PGPQTVATEIRSLSPIIGKDVLTSTYGATAETLSTSTTTHVTKTVKGGFSETRIEKRIIITGDEDVDQDQ
ALALAIKEAKLQHPDMLVTKAVVYRETDPSPEERDKKPQES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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