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Report for CCDS23899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23899.1 Public Mus musculus 10 Dnajc12 23 108 98 CCDS HistoryNCBI Gene:30045Re-query CCDS DB by CCDS ID:23899.1Re-query CCDS DB by GeneID:30045See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043317.6 ENSMUSP00000041298.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043317.6Link to Ensembl Protein Viewer:ENSMUSP00000041298.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000043317Re-query CCDS DB by Protein ID:ENSMUSP00000041298
Original member Current member NCBI NM_013888.3 NP_038916.1 Accepted alive Link to Nucleotide Sequence:NM_013888.3Link to Protein Sequence:NP_038916.1Re-query CCDS DB by Nucleotide ID:NM_013888Re-query CCDS DB by Protein ID:NP_038916Link to BLAST:NP_038916.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038916.1 198 Q9R022 198 100% 0 0

Chromosomal Locations for CCDS 23899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 63386698 63386775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63395785 63395863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63397239 63397378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63407002 63407206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 63408189 63408283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGGACGCGATACTGAACTACAGGCCGGAGGGCAGCGAGGACTACTACGCCTTGCTGGGATGCGATGAGC
TCTCCTCGGTTGAGCAAATCTTGGCAGAATTTAAGATTAGAGCTCTGGAGTGTCACCCCGACAAGCATCC
TGAGAACTCCAAAGCTGTGGAGACTTTTCAGAAATTGCAGAAGGCGAAGGAGATTCTGTGCAATGCAGAG
AGTCGAGCCCGCTATGACCATTGGCGGAGGAGCCAGATGTCAATGCCGTTCGAGCAGTGGGAAGCTTTGG
CCGACTCAGTGAAAACTTCGATGCATTGGGCTGTCAGAAGTAAGAAGGACTTGATGCTGGAAGGAAGTGG
CCAGACGTTCACCAGCTCAGTTCCAAACAAGGAACGGAGTGAGCAGCGGGAAACCAAGAAAGGGGACCCA
GACTCAAACCCAGAGAAAATGAAGCAAAAGGAACCCAAGTTCCCAGAGGAGGGCATCTCCCCACAAAACC
CAGACTCTCCAGGTCTCTCAGACTTGAACTGTGGCCACCTTCGTTTCCGCTGGTCTGGTGACGCTCCCTC
AGAACTCCTGCGGAAGTTCAGAAACTATGAAATCTGA

Translation (198 aa):
MDAILNYRPEGSEDYYALLGCDELSSVEQILAEFKIRALECHPDKHPENSKAVETFQKLQKAKEILCNAE
SRARYDHWRRSQMSMPFEQWEALADSVKTSMHWAVRSKKDLMLEGSGQTFTSSVPNKERSEQRETKKGDP
DSNPEKMKQKEPKFPEEGISPQNPDSPGLSDLNCGHLRFRWSGDAPSELLRKFRNYEI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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