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Report for CCDS40001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40001.1 Public Mus musculus 7 Iqgap1 23 108 98 CCDS HistoryNCBI Gene:29875Re-query CCDS DB by CCDS ID:40001.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40001.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167377.2 ENSMUSP00000128278.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167377.2Link to Ensembl Protein Viewer:ENSMUSP00000128278.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167377Re-query CCDS DB by Protein ID:ENSMUSP00000128278
Original member Current member NCBI NM_016721.2 NP_057930.2 Accepted alive Link to Nucleotide Sequence:NM_016721.2Link to Protein Sequence:NP_057930.2Re-query CCDS DB by Nucleotide ID:NM_016721Re-query CCDS DB by Protein ID:NP_057930Link to BLAST:NP_057930.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057930.2 1657 Q9JKF1 1657 100% 0 0

Chromosomal Locations for CCDS 40001.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80713832 80713945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80717011 80717119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80720869 80720991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80722962 80723128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80723779 80723991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80725587 80725674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80725966 80726101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80726739 80726841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80727953 80728085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80728849 80729081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80730069 80730153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80730242 80730382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80733986 80734210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80735474 80735637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80736262 80736417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80738114 80738322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80738673 80738742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80738833 80738904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80738995 80739078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80739790 80739960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80743036 80743178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80743793 80743960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80744118 80744208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80748824 80748987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80751326 80751450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80751869 80752029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80752190 80752353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80756180 80756264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80757404 80757567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80758174 80758258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80759758 80759936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80760815 80760928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80762498 80762565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80765295 80765371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80766885 80766962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80768309 80768465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80799850 80799949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80803141 80803195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4974 nt):
ATGTCCGCCGCGGAGGAGGTTGATGGCCTGGGTGTGGTCCGGCCGCACTATGGCTCCGTCCTGGATAATG
AGAGGCTCACTGCAGAGGAGATGGATGAGCGGAGACGGCAGAACGTGGCTTATGAATACCTTTGTCATCT
GGAAGAAGCAAAGAGGTGGATGGAAGCATGCCTAGGTGAGGACCTGCCGCCCACCACAGAGCTAGAGGAG
GGCCTTAGAAACGGAGTCTACCTTGCCAAGCTAGGGAACTTCTTCTCTCCCAAAGTGGTGTCCCTGAAGA
AAATCTATGATCGAGAACAGACCAGATACAAGGCTACCGGCCTCCACTTCAGACACACGGATAATGTGAT
TCAGTGGCTGAATGCCATGGATGAGATTGGGTTGCCTAAGATTTTTTACCCAGAAACCACAGATATCTAT
GACCGGAAGAACATGCCAAGATGCATCTACTGTATCCACGCCCTCAGTTTGTACCTGTTCAAACTGGGCC
TGGCTCCTCAGATTCAAGACCTGTATGGAAAGGTTGATTTCACAGAAGAAGAAATCAACAACATGAAGAT
CGAGCTGGAGAAGTACGGGATCCAGATGCCTGCCTTCAGCAAGATCGGGGGCATCCTGGCTAATGAGCTC
TCAGTGGATGAAGCTGCGCTACATGCTGCTGTTATTGCTATTAATGAAGCGATTGATCGCAGAGTTGCAG
CTGACACTTTTACGGCTCTAAAAAACCCCAATGCCATGCTCGTCAATCTTGAAGAAGGCCTGGCTCCCAC
GTACCAAGACGTGCTTTACCAGGCCAAGCAGGACAAGATGACAAACGCTAAAAACAGGACGGAAAACTCT
GACAGAGAAAGGGACGTTTATGAGGAGCTGCTCACACAAGCTGAAATCCAAGGGAATGTAAACAAAGTCA
ACACATCTTCTGCCCTGGCCAACATCAGCCTGGCTTTAGAGCAGGGCTGTGCAGTGACCCTGCTCAAGGC
TCTGCAGTCACTGGCTCTGGGCCTCCGAGGGCTGCAGACCCAGAACAGCGACTGGTACATGAAGCAGCTA
CAGAGTGATCTGCAGCAAAAGAGACAGAGTGGCCAGACTGACCCCCTGCAGAAGGAGGAGGTACAGGCCG
GAGTGGATGCTGCCAACAGTGCTGCCCAGCAGTACCAACGACGGTTGGCAGCAGTGGCAGCAATCAACGC
TGCCATCCAGAAGGGCATCGCTGAGAAGACCGTGTTGGAGCTAATGAATCCTGAAGCCCAGCTGCCCCAG
GTGTATCCATTTGCAGCTGATCTCTATCAGAAGGAGTTGGCCACCCTGCAGCAGCAGAGCCCTGAGCATA
GCCTCACCCATCCTGAGCTCACTGTTGCTGTGGAGATGCTGTCATCCGTGGCCCTCATCAACAGGGCGCT
GGAGTCAGGAGACATGACCACTGTGTGGAAGCAGCTGAGCAGCTCAGTTACGGGCCTTACCAACATCGAG
GAAGAAAACTGTCAAAGGTATCTCGATGAGCTGATGAAGCTGAAGGCTCAGGCACATGCCGAGAATAATG
CATTTATTACATGGAATGACATCCAGGCGTGTGTGGACCATGTGAACCTGGTGGTCCATGAGGAGCATGA
GCGGATTTTGGCCATCGGCTTGATTAATGAAGCCCTGGATGAAGGGGACGCTCAGAAGACTCTGCAGGCC
CTGCAGATCCCTGCAGCCAAGCTCGAGGGCGTCCTTGCAGAAGTGGCACAGCACTATCAAGACACGCTGA
TCAGAGCAAAGAGAGAAAAGGCCCAGGAAACACAGGATGAGTCAGCTGTGTTATGGTTGGATGAAATTCA
AGGTGGAATCTGGCAGTCCAACAAAGACACCCAAGAGGCCCAGAGGTTTGCCTTAGGAATCTCTGCCATC
AATGAAGCAGTAGACAGCGGTGATGTTGGCAGAACCCTGAGTGCCCTACGTTCTCCCGACGTTGGCTTAT
ATGGAGTGATCCCCGAATGTGGGGAAACGTACCAGAGTGACCTTGCTGAAGCCAAGAAGAAGAGACTGGC
AGCAGGAGATAATAACAGCAAGTGGGTGAAGCACTGGGTGAAAGGCGGGTACCATTACTACCACAACCTG
GAGACGCAAGCAGGAGGATGGGCTGAGCCCCCAGACTTTGTGCAGAATTCTGTGCAGCTTTCTCGAGAGG
AGATCCAGAGCTCCATCTCTGGAGTAACCGCTGCATATAACCGAGAGCAGCTTTGGCTGGCCAACGAAGG
CTTGATCACCAAGCTGCAAGCCTGCTGCCGTGGGTACCTCGTTCGACAGGAATTCCGATCCCGGATGAAT
TTTCTGAAGAAACAGATCCCTGCCATCACCTGCATTCAGTCACAGTGGAGAGGATACAAACAGAAGAAGG
CATATCAAGATCGGCTGGCTTACCTGCACTCCCATAAAGACGAAGTTGTGAAGATTCAGTCCCTTGCCAG
GATGCATCAAGCTCGAAAGCGCTATAGAGATCGCCTACAGTATTTCCGAGACCATATAAATGACATTATC
AAAATCCAGGCTTTCATTCGGGCCAACAAAGCTCGTGATGACTACAAGACTCTCATCAATGCTGAGGACC
CGCCTATGATTGTGGTCCGAAAGTTTGTCCACCTCCTGGACCAAAGTGATCAGGACTTCCAGGAGGAACT
TGATCTCATGAAGATGCGCGAGGAGGTCATCACCCTCATCCGTTCCAACCAGCAGCTGGAGAACGACCTC
AACCTCATGGATATCAAAATCGGACTGCTGGTGAAGAACAAGATCACGCTGCAGGATGTGGTTTCCCATA
GTAAAAAACTTACCAAAAAAAATAAGGAACAGCTGTCCGACATGATGATGATAAACAAGCAGAAGGGCGG
GCTCAAGGCTTTGAGCAAAGAGAAGAGGGAGAAGCTGGAGGCCTATCAGCATCTCTTTTATCTCCTGCAG
ACCAACCCTACCTATCTGGCCAAGCTGATCTTTCAGATGCCACAAAACAAGTCCACCAAATTCATGGACT
CTGTGATCTTCACGCTGTACAACTATGCATCTAACCAGCGGGAGGAGTACCTGCTGCTGCGGCTCTTCCA
GACAGCTCTGCAGGAGGAGATCAAGTCAAAGGTGGATCAGATTCAAGAAATCGTGACAGGAAACCCTACG
GTTATTAAGATGGTTGTAAGTTTCAACCGTGGTGCCCGGGGCCAGAATGCCCTCCGGCAGATCTTGGCCC
CTGTCGTGAAGGAAATTATGGATGACAAGTCTCTCAACATCAAAACCGACCCTGTGGATATTTACAAGTC
TTGGGTTAATCAGATGGAGTCGCAGACAGGAGAGGCGAGCAAACTGCCCTATGATGTGACTCCTGAACAA
GCCTTGTCTCATGAAGAAGTGAAGACGAGGTTAGACAACTCCATCAGGAACATGAGGGCCGTGACAGACA
AGTTCCTCTCAGCCATCGTCAGCTCTGTGGACAAAATCCCTTATGGGATGCGCTTCATTGCCAAAGTCCT
GAAGGATTCCCTGCACGAGAAGTTCCCTGACGCTGGTGAGGACGAGCTGCTGAAGATTATCGGTAACCTG
CTTTACTACCGATACATGAACCCAGCCATCGTCGCTCCCGATGCCTTCGACATCATTGACCTGTCAGCAG
GGGGCCAGCTCACCACAGACCAGCGCAGAAACCTGGGCTCCATTGCCAAGATGCTCCAGCACGCGGCGTC
CAACAAGATGTTTCTGGGCGATAATGCCCACTTAAGCATCATTAATGAGTATCTCTCGCAGTCCTACCAG
AAATTCAGACGGTTTTTCCAAGTGGCTTGTGACGTCCCAGAGCTGCAGGATAAATTTAACGTGGATGAGT
ACTCTGACCTAGTCACCCTCACTAAGCCAGTTATCTACATCTCCATTGGCGAAATCATCAACACCCACAC
TCTCCTGTTGGACCATCAGGATGCCATTGCTCCAGAGCATAACGACCCCATCCACGAACTTCTGGACGAC
CTTGGGGAGGTGCCCACCATTGAGTCCCTTATAGGAGAAAGCTGTGGCAATTCAAACGACCCCAACAAGG
AGGCTCTGGCTAAGACGGAAGTGTCTCTCACGTTGACCAACAAGTTTGACGTGCCTGGTGACGAGAACGC
AGAGATGGACGCTCGGACCATCTTACTGAATACAAAACGTTTAATTGTGGATGTCATCCGGTTCCAGCCA
GGAGAGACCTTGACTGAAATTCTAGAAACCCCAGCCACCAATGAACAGGAAGCTGAACATCAGAGGGCCA
TGCAGAGACGGGCTATCCGCGATGCCAAAACCCCTGACAAGATGAAAAAATCAAAGCCCATGAAGGAGGA
TAACAACCTCAGCCTCCAGGAGAAGAAAGAGAAGATCCAGACTGGCCTAAAGAAGCTAACGGAGCTTGGG
ACGGTGGACCCAAAGAACAGATACCAGGAACTCATCAACGACATTGCCAAGGATATCCGGAATCAGCGGA
GATACAGGCAGAGGAGGAAAGCTGAATTGGTAAAACTGCAGCAGACGTACTCGGCGCTGAACTCTAAGGC
CACCTTTTACGGCGAGCAGGTGGACTACTACAAGAGCTACATCAAAACCTGCTTGGATAACTTGGCCAGC
AAGGGCAAGGTCTCCAAAAAGCCTAGGGAAATGAAAGGCAAGAAAAGCAAAAAGATTTCTCTGAAGTACA
CAGCAGCGAGGCTGCATGAGAAGGGCGTCCTTCTGGAGATTGAAGACCTTCAGGCAAACCAATTTAAAAA
TGTTATCTTCGAAATTGGTCCAACAGAAGAAGTTGGAGACTTTGAAGTAAAAGCCAAGTTCATGGGAGTT
CAGATGGAGACTTTCATGTTGCATTATCAGGACTTGCTGCAGCTACAGTATGAAGGAGTTGCAGTTATGA
AATTATTTGATAGAGCTAAAGTGAATGTCAACCTCCTGATCTTCCTTCTCAACAAAAAGTTCTATGGGAA
GTAA

Translation (1657 aa):
MSAAEEVDGLGVVRPHYGSVLDNERLTAEEMDERRRQNVAYEYLCHLEEAKRWMEACLGEDLPPTTELEE
GLRNGVYLAKLGNFFSPKVVSLKKIYDREQTRYKATGLHFRHTDNVIQWLNAMDEIGLPKIFYPETTDIY
DRKNMPRCIYCIHALSLYLFKLGLAPQIQDLYGKVDFTEEEINNMKIELEKYGIQMPAFSKIGGILANEL
SVDEAALHAAVIAINEAIDRRVAADTFTALKNPNAMLVNLEEGLAPTYQDVLYQAKQDKMTNAKNRTENS
DRERDVYEELLTQAEIQGNVNKVNTSSALANISLALEQGCAVTLLKALQSLALGLRGLQTQNSDWYMKQL
QSDLQQKRQSGQTDPLQKEEVQAGVDAANSAAQQYQRRLAAVAAINAAIQKGIAEKTVLELMNPEAQLPQ
VYPFAADLYQKELATLQQQSPEHSLTHPELTVAVEMLSSVALINRALESGDMTTVWKQLSSSVTGLTNIE
EENCQRYLDELMKLKAQAHAENNAFITWNDIQACVDHVNLVVHEEHERILAIGLINEALDEGDAQKTLQA
LQIPAAKLEGVLAEVAQHYQDTLIRAKREKAQETQDESAVLWLDEIQGGIWQSNKDTQEAQRFALGISAI
NEAVDSGDVGRTLSALRSPDVGLYGVIPECGETYQSDLAEAKKKRLAAGDNNSKWVKHWVKGGYHYYHNL
ETQAGGWAEPPDFVQNSVQLSREEIQSSISGVTAAYNREQLWLANEGLITKLQACCRGYLVRQEFRSRMN
FLKKQIPAITCIQSQWRGYKQKKAYQDRLAYLHSHKDEVVKIQSLARMHQARKRYRDRLQYFRDHINDII
KIQAFIRANKARDDYKTLINAEDPPMIVVRKFVHLLDQSDQDFQEELDLMKMREEVITLIRSNQQLENDL
NLMDIKIGLLVKNKITLQDVVSHSKKLTKKNKEQLSDMMMINKQKGGLKALSKEKREKLEAYQHLFYLLQ
TNPTYLAKLIFQMPQNKSTKFMDSVIFTLYNYASNQREEYLLLRLFQTALQEEIKSKVDQIQEIVTGNPT
VIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDPVDIYKSWVNQMESQTGEASKLPYDVTPEQ
ALSHEEVKTRLDNSIRNMRAVTDKFLSAIVSSVDKIPYGMRFIAKVLKDSLHEKFPDAGEDELLKIIGNL
LYYRYMNPAIVAPDAFDIIDLSAGGQLTTDQRRNLGSIAKMLQHAASNKMFLGDNAHLSIINEYLSQSYQ
KFRRFFQVACDVPELQDKFNVDEYSDLVTLTKPVIYISIGEIINTHTLLLDHQDAIAPEHNDPIHELLDD
LGEVPTIESLIGESCGNSNDPNKEALAKTEVSLTLTNKFDVPGDENAEMDARTILLNTKRLIVDVIRFQP
GETLTEILETPATNEQEAEHQRAMQRRAIRDAKTPDKMKKSKPMKEDNNLSLQEKKEKIQTGLKKLTELG
TVDPKNRYQELINDIAKDIRNQRRYRQRRKAELVKLQQTYSALNSKATFYGEQVDYYKSYIKTCLDNLAS
KGKVSKKPREMKGKKSKKISLKYTAARLHEKGVLLEIEDLQANQFKNVIFEIGPTEEVGDFEVKAKFMGV
QMETFMLHYQDLLQLQYEGVAVMKLFDRAKVNVNLLIFLLNKKFYGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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