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Report for CCDS17535.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17535.1 Public Mus musculus 3 S100a14 23 108 98 CCDS HistoryNCBI Gene:66166Re-query CCDS DB by CCDS ID:17535.1Re-query CCDS DB by GeneID:66166See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17535.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167598.5 ENSMUSP00000126821.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167598.5Link to Ensembl Protein Viewer:ENSMUSP00000126821.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167598Re-query CCDS DB by Protein ID:ENSMUSP00000126821
Original member Current member EBI ENSMUST00000199538.4 ENSMUSP00000142428.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000199538.4Link to Ensembl Protein Viewer:ENSMUSP00000142428.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000199538Re-query CCDS DB by Protein ID:ENSMUSP00000142428
Original member Current member NCBI NM_001163525.2 NP_001156997.1 Accepted alive Link to Nucleotide Sequence:NM_001163525.2Link to Protein Sequence:NP_001156997.1Re-query CCDS DB by Nucleotide ID:NM_001163525Re-query CCDS DB by Protein ID:NP_001156997Link to BLAST:NP_001156997.1
Original member Current member NCBI NM_025393.4 NP_079669.2 Accepted alive Link to Nucleotide Sequence:NM_025393.4Link to Protein Sequence:NP_079669.2Re-query CCDS DB by Nucleotide ID:NM_025393Re-query CCDS DB by Protein ID:NP_079669Link to BLAST:NP_079669.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156997.1 104 Q9D2Q8 104 100% 0 0
NP_079669.2 104 Q9D2Q8 104 100% 0 0

Chromosomal Locations for CCDS 17535.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90527264 90527293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90527714 90527860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90528078 90528215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (315 nt):
ATGGGACAGTGTCGGTCAGCCAATGCTGAGGATGCCCAAGAATTCAGTGATGTAGAGAGGGCCATTGAGA
CACTCATCAAGAACTTCCATAAATACTCTGTGGCGGGTAAAAAGGAAACACTGACCCCTGCTGAGCTTCG
AGACCTGGTTACCCAGCAGCTGCCACACCTCATGCCGAGCAACTGTGGGTTAGAAGAGAAAATTGCCAAC
CTGGGCAACTGTAATGACTCGAAACTGGAGTTTGGAAGCTTCTGGGAGTTGATTGGAGAAGCAGCCAAGA
GTGTGAAGATGGAGAGGCCTGTTACTCGGAGCTGA

Translation (104 aa):
MGQCRSANAEDAQEFSDVERAIETLIKNFHKYSVAGKKETLTPAELRDLVTQQLPHLMPSNCGLEEKIAN
LGNCNDSKLEFGSFWELIGEAAKSVKMERPVTRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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