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Report for CCDS29267.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29267.2 Public Mus musculus 18 Minar2 23 108 98 CCDS HistoryNCBI Gene:225583Re-query CCDS DB by CCDS ID:29267.2Re-query CCDS DB by GeneID:225583See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 29267.2
The coding region has been updated to extend the N-terminus and to represent an alternate splice pattern from a variant that lacks exons 2 and 3. The update changes the protein length from 151 aa to 193 aa. The AUG used in the update has some conservation, but there is another downstream AUG that is better conserved than the first, and which has a stronger Kozak signal, and is located 4 codons downstream. This means that the downstream AUG may also be used due to leaky scanning.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29267.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165666.8 ENSMUSP00000125952.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165666.8Link to Ensembl Protein Viewer:ENSMUSP00000125952.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000165666Re-query CCDS DB by Protein ID:ENSMUSP00000125952
Original member Current member NCBI NM_173759.5 NP_776120.3 Accepted alive Link to Nucleotide Sequence:NM_173759.5Link to Protein Sequence:NP_776120.3Re-query CCDS DB by Nucleotide ID:NM_173759Re-query CCDS DB by Protein ID:NP_776120Link to BLAST:NP_776120.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776120.3 193 Q8C4X7-1 193 100% 0 0

Chromosomal Locations for CCDS 29267.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 59062386 59062562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59072193 59072417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 59075558 59075737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGAAAGGGGACATGGATCTTTCTGTTTTGCCCAATAACAACCATCCTGACAAATTCCTGCAGCTTGACG
TGAAGTCTTTAATGAGGAGCTCAACCCTTCTGCAGGCTAGCCTCGCGAGATTTCCGGGTGGAAATTATCC
TGCCACACAACACTGGCAAAACCTTGTCTACTCACAGAGAGAAAAAACCATTGCTACTCAGCGAATCAAG
GGATTTGGTGTGGAGAACCCAGTCCTTCCTGAGAGTCCTCCAGCATCCATGTCTTCAGTTATGAAGAACA
ACCCGTTGTATGGTGACATAACTTTGGAAGAAGCTATGGAAGAAAGGAAAAAGAGTCCTTCATGGACCAT
TGAGGAGTATGACAAGCATTCTGTGCATACAAATCTCTCTGGACATCTGAAGGAAAACCCCAACGACCTG
CGCTTTTGGTTGGGGGATACGTACACTCCTGGCTTCGACACTCTGCTGAAAAAGAAGAAGAAACGCAACA
AGCGATCAAAATTGTGTCACATGGGTCTGATTTTACTCCTTGTGGCCTCCATTCTGGTTACCATAGTGAC
TCTCAGCACCATATTCTCTTAA

Translation (193 aa):
MKGDMDLSVLPNNNHPDKFLQLDVKSLMRSSTLLQASLARFPGGNYPATQHWQNLVYSQREKTIATQRIK
GFGVENPVLPESPPASMSSVMKNNPLYGDITLEEAMEERKKSPSWTIEEYDKHSVHTNLSGHLKENPNDL
RFWLGDTYTPGFDTLLKKKKKRNKRSKLCHMGLILLLVASILVTIVTLSTIFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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