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Report for CCDS23660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23660.1 Public Mus musculus 9 Limd1 23 108 98 CCDS HistoryNCBI Gene:29806Re-query CCDS DB by CCDS ID:23660.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026269.3 ENSMUSP00000026269.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026269.3Link to Ensembl Protein Viewer:ENSMUSP00000026269.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000026269Re-query CCDS DB by Protein ID:ENSMUSP00000026269
Original member NCBI NM_013860.2 NP_038888.2 Updated not alive Link to Nucleotide Sequence:NM_013860.2Link to Protein Sequence:NP_038888.2Re-query CCDS DB by Nucleotide ID:NM_013860Re-query CCDS DB by Protein ID:NP_038888
Current member NCBI NM_013860.3 NP_038888.2 Accepted alive Link to Nucleotide Sequence:NM_013860.3Link to Protein Sequence:NP_038888.2Re-query CCDS DB by Nucleotide ID:NM_013860Re-query CCDS DB by Protein ID:NP_038888Link to BLAST:NP_038888.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038888.2 668 Q9QXD8 668 100% 0 0

Chromosomal Locations for CCDS 23660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 123479238 123480621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123500131 123500232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123510508 123510575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123511216 123511278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123516775 123516905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123517363 123517414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123518096 123518164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 123519106 123519243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2007 nt):
ATGGATAAATACGATGATCTGGGCCTTGAGGCCAGTAAGTTCATCGAGGACCTGAACATGTATGAGGCCT
CCAAGGATGGGCTCTTCCGGGTGGACAAGGGTGCTGGCAACAACCCAGAATTTGAGGAAACTCGAAGGGT
GTTCGCGACCAAGATGGCCAAAATCCACCTCCAGCAGCAGCAACAGCAGCAGCTCCTACAGGAGGAGGCC
CTACCTAGGGCAGGCAGAAGCCCGGTCAACGGTGGGAACCGTCAGGGTGCGAGCGGCAAGCTGGCTGCAG
ATGGGGCCGCTAAGCCTCCTCTGGCTGTGCCAACAGTGGCACCTGGATTAGCTACTACCACTGCGGCCGC
GCAGCCCTCGTACCCATCTCAGGAGCAGAGGATCAGGCCATCTGCCCATGGTGCAAGGCCTGGCAGTCAG
AACTGTGGTTCCAGGGAGGGGCCTGTGAGTTCCCAGAGACCTGCTTTACACGGCCTGAGTCCCTCCTGTG
AAGACCCTTCCTGCCTCACTCACGGAGACTATTATGACAATTTCTCTTTGGCAAGCCCACAGTGGGGTGA
TAAACCTGAAGGGTGCCCCAGCGTGAGTCTGGGTGTAGGAAGTGGATGGCCTGGTTGCCCAGGGAATGAC
TCCACATTGCCCAAATCCTGTGGAGACCATCACCCTTACCAGCCACAGCTCTCCACAGTGTGCTCTGGCA
GGTCTTTTGAAAGTGGCATCAGTGGCCAGGACGGTGGCATTGGTGGCCATAGCAGCGAGAAGCCAACAGG
CCTTTGGTCCACTGCCTCCTCTCAGCGAGTGAACCTCGGTTTTTCTTCCATGGGCTTGGAGAATGGGACC
TCCGCTCAACCCAAGGGCACAACTGTTTCAGCACCGATGGTCCCTAGCAGCGCCAGCCAAGGAGCTTGTC
CGAAAAGAGATTCAGGTCTGGGATATGAGGCTTCAGGCAGGGTCTTCAAACCCCTTGTGGACACTCAGCC
TTGGCTGCAGGATGGGCCCAAGTCTTACCTCTCAGTTTCTGCTCCATTATCCTCGACAGCTGGCAAGGAC
AGTACCCAGCCAGGTATGACCACCGGGCTGGATCCTAAGTTTGGATGCGTGGAGTCTGGCACTAGTCCCA
AGCCCAGCCCCACCAGTAACGTCCATCCGGTAATGTCCACTCCATCTGAGTTATCTTGTAAAGAGAGTTC
TCCCAGCTGGTCCACTGACAGTAGTCTGGAACCTGTGCTCCCAGGGAGTCCCACCCCCTCCAGGGTGAGA
TTGCCCTGCCAGACCCTCGCACCGGGCCCTGAGCTTGGACCCTCCACTGCGGAATTGAAGTTGGAAGCCC
TCACCCAGCGTCTGGAGCGAGAGATGGATGCTCACCCCAAAGCGGACTACTTCGGTTCCTGTGTGAAATG
CAGCAAAGGGGTGTTTGGAGCTGGCCAGGCCTGTCAGGCCATGGGAGATCTCTACCACGATGCGTGCTTC
ACCTGTGCAGCCTGCAGCAGGAAGTTAAGAGGAAAGGCCTTCTATTTTGTCAATGGCAAAGTATTCTGTG
AGGAAGACTTTTTGTATTCTGGCTTTCAGCAGTCTGCGGACAGGTGTTTTCTTTGTGGACACCTGATCAT
GGACATGATCCTACAGGCCCTAGGGAAGTCCTATCACCCCGGCTGTTTCCGCTGCGTCATCTGTAATGAA
TGTCTGGATGGGGTTCCTTTCACCGTGGACTCTGAGAACAAGATCTACTGTGTCCGAGACTATCACAAGG
TGCTGGCCCCCAAGTGTGCAGCCTGTGGCCTTCCCATCCTTCCGCCAGAGGGTTCAGACGAGACCATCAG
AGTTGTGTCCATGGACAGGGACTACCACGTAGAGTGCTACCACTGTGAGGACTGTGGTCTGGAGCTCAAT
GACGAGGACGGTCACCGCTGCTATCCACTGGAGGACCACCTGTTCTGTCACTCCTGCCATGTCAAGAGAC
TGGAGAAAGGACCCTCACCTGCACCCCTCCACCAGCACCACTTCTAG

Translation (668 aa):
MDKYDDLGLEASKFIEDLNMYEASKDGLFRVDKGAGNNPEFEETRRVFATKMAKIHLQQQQQQQLLQEEA
LPRAGRSPVNGGNRQGASGKLAADGAAKPPLAVPTVAPGLATTTAAAQPSYPSQEQRIRPSAHGARPGSQ
NCGSREGPVSSQRPALHGLSPSCEDPSCLTHGDYYDNFSLASPQWGDKPEGCPSVSLGVGSGWPGCPGND
STLPKSCGDHHPYQPQLSTVCSGRSFESGISGQDGGIGGHSSEKPTGLWSTASSQRVNLGFSSMGLENGT
SAQPKGTTVSAPMVPSSASQGACPKRDSGLGYEASGRVFKPLVDTQPWLQDGPKSYLSVSAPLSSTAGKD
STQPGMTTGLDPKFGCVESGTSPKPSPTSNVHPVMSTPSELSCKESSPSWSTDSSLEPVLPGSPTPSRVR
LPCQTLAPGPELGPSTAELKLEALTQRLEREMDAHPKADYFGSCVKCSKGVFGAGQACQAMGDLYHDACF
TCAACSRKLRGKAFYFVNGKVFCEEDFLYSGFQQSADRCFLCGHLIMDMILQALGKSYHPGCFRCVICNE
CLDGVPFTVDSENKIYCVRDYHKVLAPKCAACGLPILPPEGSDETIRVVSMDRDYHVECYHCEDCGLELN
DEDGHRCYPLEDHLFCHSCHVKRLEKGPSPAPLHQHHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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