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Report for CCDS55483.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55483.1 Public Homo sapiens X WDR44 24 110 108 CCDS HistoryNCBI Gene:54521Re-query CCDS DB by CCDS ID:55483.1Re-query CCDS DB by GeneID:54521See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 55483.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371822.9 ENSP00000360887.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371822.9Link to Ensembl Protein Viewer:ENSP00000360887.5Re-query CCDS DB by Nucleotide ID:ENST00000371822Re-query CCDS DB by Protein ID:ENSP00000360887
Original member Current member NCBI NM_001184966.1 NP_001171895.1 Accepted alive Link to Nucleotide Sequence:NM_001184966.1Link to Protein Sequence:NP_001171895.1Re-query CCDS DB by Nucleotide ID:NM_001184966Re-query CCDS DB by Protein ID:NP_001171895Link to BLAST:NP_001171895.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171895.1 824 Q5JSH3-4 824 100% 0 0

Chromosomal Locations for CCDS 55483.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 118346504 118346580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118378419 118378452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118392632 118393271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118394055 118394185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118395249 118395344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118396970 118397106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118398387 118398470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118404338 118404444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118406875 118407026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118409489 118409627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118410895 118410959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118432781 118432894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118436702 118436824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118442244 118442345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118442565 118442680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118443560 118443687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118444360 118444494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 118448893 118448987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGGCGTCGGAAAGCGACACCGAGGAATTCTATGATGCCCCTGAAGATGTGCACCTAGGGGGCGGCTACC
CCGTGGGGTCTCCAGGAAAAGTTGGGCTTTCAACATTCAAGATTATTGAAAGTATTATTGAGGAGAGTCA
GAAAGTACTACAGCTTGAAGATGACTCTTTGGATTCCAAAGGAAAAGAACTCTCTGATCAAGCTACTGCC
AGTCCTATTGTGGCTAGAACAGATCTGAGCAATATACCCGGACTGTTAGCCATAGATCAAGTACTACCGG
AAGAATCCCAAAAGGCAGAGAGTCAGAATACATTTGAAGAGACTGAATTAGAATTAAAAAAATGCTTTCC
TTCTGATGAAACCTGTGAGAAACCAGTAGATGAAACCACGAAGTTAACTCAAACAAGTTCAACTGAGCAG
CTTAATGTGCTTGAAACTGAAACAGAAGTATTGAACAAGGAAGCAGTGGAAGTCAAAGGAGGTGGTGATG
TTTTAGAGCCTGTGTCCTCAGACTCCTTATCTACTAAAGATTTTGCCGCTGTGGAAGAAGTGGCCCCTGC
CAAACCCCCAAGACACCTTACTCCAGAGCCTGATATAGTGGCTAGTACAAAGAAGCCTGTTCCAGCACGC
CCACCTCCTCCAACTAATTTCCCACCTCCTAGACCCCCACCTCCTTCTCGACCTGCTCCACCACCAAGAA
AAAGGAAAAGCGAATTGGAATTTGAGACTCTGAAAACTCCTGATATAGATGTTCCCAAAGAGAATATTAC
GTCTGATTCTCTCCTAACCGCAAGCATGGCTTCAGAAAGTACGGTTAAGGATTCTCAGCCTTCTCTTGAT
TTGGCAAGTGCTACCAGTGGAGATAAAATAGTTACCGCCCAGGAAAATGGAAAAGCACCTGATGGGCAGA
CTGTAGCAGGTGAAGTGATGGGCCCTCAGAGACCTAGATCCAACTCTGGGAGAGAGCTTACTGATGAGGA
AATTTTAGCCAGTGTAATGATTAAGAACCTGGATACTGGAGAAGAAATACCTTTGAGTCTTGCAGAAGAG
AAACTACCAACAGGCATTAATCCTCTCACTCTACACATCATGAGAAGGACAAAAGAATATGTAAGTAATG
ACGCGGCACAGTCAGATGATGAAGAGAAGTTACAGTCTCAGCCAACAGATACTGATGGTGGAAGGTTAAA
ACAGAAAACGACTCAACTAAAGAAGTTTCTTGGAAAATCAGTAAAGAGAGCAAAGCACCTTGCTGAGGAA
TATGGTGAACGTGCTATAAATAAAGTTAAAAGTGTTAGAGATGAAGTGTTTCATACTGATCAAGATGATC
CTTCATCAAGTGATGATGAAGGAATGCCATACACAAGACCAGTTAAATTCAAAGCAGCACACGGTTTCAA
AGGACCTTATGATTTTGATCAGATCAAAGTGGTGCAAGATCTTAGTGGTGAACATATGGGAGCTGTTTGG
ACCATGAAATTTTCTCACTGTGGCCGATTACTTGCCTCAGCTGGACAAGACAATGTAGTGAGAATATGGG
CTTTAAAAAATGCTTTTGACTATTTCAACAATATGCGAATGAAATACAATACTGAAGGACGTGTGTCCCC
ATCACCCTCTCAGGAAAGTCTAAGTTCATCAAAATCGGATACAGATACAGGGGTATGCAGTGGAACTGAT
GAAGACCCTGATGATAAAAACGCACCCTTTCGGCAACGGCCATTTTGCAAATATAAAGGACATACTGCTG
ATCTCCTTGATCTTTCATGGTCTAAAAACTACTTTCTTCTTTCTTCTTCAATGGATAAAACAGTCAGATT
ATGGCACATTTCTCGAAGAGAATGCCTTTGCTGTTTTCAACATATAGATTTTGTCACTGCCATAGCTTTT
CATCCAAGACATTTGAAATACCATACACAAATACATGTCCGATCTACTAGAGGGCGCAACAAGGTTGGAA
GAAAAATTACTGGCATTGAGCCTTTACCTGGAGAAAATAAGATATTGGTAACCTCAAATGACTCCAGAAT
CAGACTATATGATTTGAGAGATTTGTCACTATCCATGAAGTATAAGGGTTACGTCAATAGCAGCAGCCAG
ATCAAAGCAAGTTTCAGCCATGATTTTACTTACCTCGTTAGTGGTTCAGAAGATAAGTATGTTTATATCT
GGAGTACCTACCATGACCTAAGCAAGTTTACTTCAGTCAGGAGAGATCGTAATGACTTCTGGGAAGGTAT
TAAAGCCCACAATGCAGTTGTTACATCAGCCATCTTTGCACCAAACCCAAGTTTGATGTTATCTTTGGAT
GTGCAATCTGAAAAATCAGAAGGGAACGAGAAAAGTGAAGATGCTGAAGTTTTGGATGCCACACCTTCTG
GTATTATGAAGACAGATAACACAGAAGTTCTTCTCTCTGCTGACTTCACTGGAGCAATCAAAGTGTTTGT
TAATAAAAGAAAAAATGTATCTTAA

Translation (824 aa):
MASESDTEEFYDAPEDVHLGGGYPVGSPGKVGLSTFKIIESIIEESQKVLQLEDDSLDSKGKELSDQATA
SPIVARTDLSNIPGLLAIDQVLPEESQKAESQNTFEETELELKKCFPSDETCEKPVDETTKLTQTSSTEQ
LNVLETETEVLNKEAVEVKGGGDVLEPVSSDSLSTKDFAAVEEVAPAKPPRHLTPEPDIVASTKKPVPAR
PPPPTNFPPPRPPPPSRPAPPPRKRKSELEFETLKTPDIDVPKENITSDSLLTASMASESTVKDSQPSLD
LASATSGDKIVTAQENGKAPDGQTVAGEVMGPQRPRSNSGRELTDEEILASVMIKNLDTGEEIPLSLAEE
KLPTGINPLTLHIMRRTKEYVSNDAAQSDDEEKLQSQPTDTDGGRLKQKTTQLKKFLGKSVKRAKHLAEE
YGERAINKVKSVRDEVFHTDQDDPSSSDDEGMPYTRPVKFKAAHGFKGPYDFDQIKVVQDLSGEHMGAVW
TMKFSHCGRLLASAGQDNVVRIWALKNAFDYFNNMRMKYNTEGRVSPSPSQESLSSSKSDTDTGVCSGTD
EDPDDKNAPFRQRPFCKYKGHTADLLDLSWSKNYFLLSSSMDKTVRLWHISRRECLCCFQHIDFVTAIAF
HPRHLKYHTQIHVRSTRGRNKVGRKITGIEPLPGENKILVTSNDSRIRLYDLRDLSLSMKYKGYVNSSSQ
IKASFSHDFTYLVSGSEDKYVYIWSTYHDLSKFTSVRRDRNDFWEGIKAHNAVVTSAIFAPNPSLMLSLD
VQSEKSEGNEKSEDAEVLDATPSGIMKTDNTEVLLSADFTGAIKVFVNKRKNVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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