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Report for CCDS53818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53818.1 Public Homo sapiens 12 PLEKHG7 24 110 108 CCDS HistoryNCBI Gene:440107Re-query CCDS DB by CCDS ID:53818.1Re-query CCDS DB by GeneID:440107See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544406.2 ENSP00000446043.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544406.2Link to Ensembl Protein Viewer:ENSP00000446043.2Re-query CCDS DB by Nucleotide ID:ENST00000544406Re-query CCDS DB by Protein ID:ENSP00000446043
Original member Current member NCBI NM_001178097.3 NP_001171568.1 Accepted alive Link to Nucleotide Sequence:NM_001178097.3Link to Protein Sequence:NP_001171568.1Re-query CCDS DB by Nucleotide ID:NM_001178097Re-query CCDS DB by Protein ID:NP_001171568Link to BLAST:NP_001171568.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171568.1 173 Q6ZR37-3 173 100% 0 0

Chromosomal Locations for CCDS 53818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 92706632 92707153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGAGAAAACAGAGTCATTCTGTCCAGAGGTGCCACCCCAAGACTGTGGAGCCTCTCCTCGGCCCTCGC
TGAGGAGCCTGCCAAAGAACCAGGGGAGTCTCCTCCAGTTTGACCGGCAAGCCCCAGGCCGCATCTCCAC
CTCGCCCACTTTGAGGAGATTAAGGACCCGTGGCTGTGGGACAAGGCAGGATGCCTGGCAGGTGACCACC
TGGGGAAGCTGGGGAGCTCCTGTGGGCTTCCCATGTTACCTTTCGAAGAGCCTGCCAGGAAGCCCAAAGG
ATTCTTCACACTTGCTGTCACCCTTGAGACTCCACTCAAGATTGACCTCTGAACCTGAAAGGGCCCTGAA
TGCAGCTGACTCACTGGAGCCCCAAACCCGGCCCACTGACAAGTATCTCCCTCCTGAGCTTCAGCCTGTC
AATGAAGGGTCCCTTCACCAGGCCTCTCTTCGGCAGCAAGAAGGCCACTTCCTGCCCAGCCCCACCCTAC
GACACCCTAGTCCTCAGGTAACACAGCTCTAA

Translation (173 aa):
MEKTESFCPEVPPQDCGASPRPSLRSLPKNQGSLLQFDRQAPGRISTSPTLRRLRTRGCGTRQDAWQVTT
WGSWGAPVGFPCYLSKSLPGSPKDSSHLLSPLRLHSRLTSEPERALNAADSLEPQTRPTDKYLPPELQPV
NEGSLHQASLRQQEGHFLPSPTLRHPSPQVTQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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