NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56650.1 Public Mus musculus 1 Fmo6 23 108 98 CCDS HistoryNCBI Gene:226565Re-query CCDS DB by CCDS ID:56650.1Re-query CCDS DB by GeneID:226565See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000178465.2 ENSMUSP00000136378.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178465.2Link to Ensembl Protein Viewer:ENSMUSP00000136378.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178465Re-query CCDS DB by Protein ID:ENSMUSP00000136378
Original member Current member NCBI NM_001178038.1 NP_001171509.1 Accepted alive Link to Nucleotide Sequence:NM_001178038.1Link to Protein Sequence:NP_001171509.1Re-query CCDS DB by Nucleotide ID:NM_001178038Re-query CCDS DB by Protein ID:NP_001171509Link to BLAST:NP_001171509.1

Chromosomal Locations for CCDS 56650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 162916723 162917065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162918197 162918269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162920311 162920666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162922659 162922858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162924292 162924434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162926088 162926250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162929882 162930070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 162936995 162937126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1599 nt):
ATGGGCAAGAAAGTGGCCATCGTGGGAGCTGGAGTAAGTGGCTTGGCCGCAATACGGTGCTGTCTGGAGG
AAGGGCTGGACCCCATCTGCTTTGAAAGGAGCATCGATGTTGGAGGGCTATGGAAATTCTCGAGCCACGC
AGAGGAAGGAAGGGCCAGCATTTACCAGTCGGTCTTCACCAACTCTTCCAAAGAGATGATGTGTTTTCCA
GACTTCCCCTATCCTGATGATTTCCCGAACTACATGCACCACAGCAAACTCCAGGAATACATCACGTCGT
TCGCTCAGAAGAAGGGTCTTCTGAGATACATACAGTTTGAGACCCTGGTTTCTAGTATAAAGAAATGTTC
TAGCTTCTTGACCACTGGCCAGTGGGTGGTTGTTACTGAAAAGGAAGGCAAGCAAGAATCTGTGCTCTTT
GATGCTGTGATGATCTGTTCAGGACATCACGTGTACCCCAACATGCCAACTGACTCTTTTCCCGGTCTAG
AGCACTTTCGAGGCAAGTGCCTACACAGCCGGGATTACAAGGGCCCAGGAGCCTTCCAGGGAAAGAAAGT
CCTTGTGATTGGCCTGGGAAACTCAGCATCCGACATTGCTGTTGAGCTCAGTCGTCTGGCTACACAGGTC
ATCATCAGCACCAGAAGCGGTTCCTGGATCATGAGTCGAGTTTGGAATGATGGGTATCCTTGGGATATGG
TATATGTTACCCGATTCACATCCTTCCTCCGGAATATCCTTCCTTCTTTTGTCTCTGACTGGTTATATAT
CAAGAAGATGAACACATGGTTTAAGCATGAGAACTACGGCCTGATGCCTTTAAATGGCCCTCTCAGGAAA
GAGCCCGTGTTCAATGATGAGCTCCCATCCCGCATCCTGTGTGGCATGGTGACCATCAAGCCCATCGTGA
CCAAGTTCACAGAGACCTCCGCTGTGTTTGAGGATGGGACTGTGTTTGAGGCCATTGACTGTGTCATCTT
CGCCACAGGCTATGGTTATGCCTACCCCTTCCTGGATGACTCCATCATCAAAAGCAGAAATAATGAGGTC
ACTTTGTACAAAGGCATCTTCCCTCCTCAACTAGAGAAACCAACCATGGCAGTGATTGGCCTGGTCCAGT
CCCTGGGTGCTGCCATTCCTACAGCTGACCTCCAGGCACGCTGGGCTGCTAAAGTGTTTACAAACACATG
TGTCCTGCCAACTACAAATGAAATGATGGATGACATTGATGAGAAAATGGGCAAGAAACTCAAGTGGTTT
GGCCAGAGCCACACTCTGCAGACAGATTATATCACATACATGGATGAGCTGAGCTCCTTTATAGGAGCCA
AGCCTAACATACCCTGGCTCTTCTTGACTGACCCCCAGCTGGCCCTGGAAGTGTACTTTGGCCCTTGTAG
TCCTTATCAGTTTCGATTGATGGGACCAGGAAAGTGGGACGGAGCTAGAAATGCCATCCTAACTCAATGG
AAACGGACGGTGAAGCCAACCAGGACAAGGGCTGTCGGCGAAGCACAAAGACCACGTCACCTTTATGACT
TGCTACGAATGCTTTTCTTCCCAGTGTTCTTTCTGGCTGTTTTGCTCACCTTTTATTAA

Translation (532 aa):
MGKKVAIVGAGVSGLAAIRCCLEEGLDPICFERSIDVGGLWKFSSHAEEGRASIYQSVFTNSSKEMMCFP
DFPYPDDFPNYMHHSKLQEYITSFAQKKGLLRYIQFETLVSSIKKCSSFLTTGQWVVVTEKEGKQESVLF
DAVMICSGHHVYPNMPTDSFPGLEHFRGKCLHSRDYKGPGAFQGKKVLVIGLGNSASDIAVELSRLATQV
IISTRSGSWIMSRVWNDGYPWDMVYVTRFTSFLRNILPSFVSDWLYIKKMNTWFKHENYGLMPLNGPLRK
EPVFNDELPSRILCGMVTIKPIVTKFTETSAVFEDGTVFEAIDCVIFATGYGYAYPFLDDSIIKSRNNEV
TLYKGIFPPQLEKPTMAVIGLVQSLGAAIPTADLQARWAAKVFTNTCVLPTTNEMMDDIDEKMGKKLKWF
GQSHTLQTDYITYMDELSSFIGAKPNIPWLFLTDPQLALEVYFGPCSPYQFRLMGPGKWDGARNAILTQW
KRTVKPTRTRAVGEAQRPRHLYDLLRMLFFPVFFLAVLLTFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH