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Report for CCDS53120.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53120.1 Public Mus musculus X 4930480E11Rik 23 108 98 CCDS HistoryNCBI Gene:74910Re-query CCDS DB by CCDS ID:53120.1Re-query CCDS DB by GeneID:74910See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53120.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035626.7 ENSMUSP00000037594.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035626.7Link to Ensembl Protein Viewer:ENSMUSP00000037594.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000035626Re-query CCDS DB by Protein ID:ENSMUSP00000037594
Original member Current member NCBI NM_001177966.2 NP_001171437.1 Accepted alive Link to Nucleotide Sequence:NM_001177966.2Link to Protein Sequence:NP_001171437.1Re-query CCDS DB by Nucleotide ID:NM_001177966Re-query CCDS DB by Protein ID:NP_001171437Link to BLAST:NP_001171437.1

Chromosomal Locations for CCDS 53120.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78369671 78370855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1185 nt):
ATGGGGGATCAGAGGCTGCCAGAGAACCAGCTTCCTCGATTACCCAGGTGCAAGCCTGTCTTGAAACACA
AGACAGAACAACAGACATCCACTCCTTTCATGGAGGACCATCACCAGCACTTTTCTCAGGAAGAACTGGA
TGACTTTACTACAGATTATGAGCCACATGAAGAGATTTCTTCACAAACCATCCAGGGGACTGTTTTCCCC
AGAATTTCTCATAAATTATCCAGTACTGCCACGAAAATGAATCAGAGAAAGCTACCCAAGGATTTGGGAT
TGTTTTCCTCAATTTCAATGGGTCAGCAAGGAATTAGAAGACCACAATACAAGTTGGATCACTTGTCTCA
GATGGAAGATGATGCTGAAGAATATAGCATAAATTTGAAGGAGCAGCCAAAATGTGATCAGAATCTGAAA
AAGTGGCCTAGCTTCAAAAATAAAATGAAAGTAAATAAGAATAGCAAGCATGGGAAGAAACTTCACAACC
TGCATCCCCCTGAAAATTCCAGGTTGGGTCAAAAAAAATTCCTTCCGACACACACATCCAGAAATAAGAA
TTTGCTTGACCCTCTTTATTATAGATGCACACAAAGGGGAGGTGATAATACACATGAATTGAATGAAGCA
ATGGGAAACTTGGATGTGTTGCAACAATTTGAAATGGACTATGCTAACCAACCAACTTATGACGAATTCT
CAGACAAGATAATCAGTCTTCCTCCTTCAAAGCTCAAGTACTTCAGAGGATTAACCAAAGAAAATGGAAT
CAAAGTCTGCAAACAGATATCAAAATTTGATATGAAAGTCCAAAAGCCACATGATCTTTCTCTGTCCACC
AAGGAGAAGTTTAAACATGGACCATCATACCAGAAAGTGAAGCAATTGAAAACACAGGCTGTAAAAGAGC
CTTTAAATGACCCCAAGAGCTTGCCTGAAATTGAAGGTAAAAATGTTTGCAAACCAGATGTACTTGAAAA
TCTCTATGGAGCAATTGCCTTTAAGGATTTCATTGTACACAAGGGCTATGATATGCCAGGAATACTCCAG
AAGCTTTTTATGAAAAAGGGATGGAATTACAACTCAGTTAATACTCCTATACCAAGTGTATTAAAATATC
ATGAAATGATTCAGAAAAAAATGGATGATGAAGATGATGAAAACAGTGGAAATGAACTTTACTAA

Translation (394 aa):
MGDQRLPENQLPRLPRCKPVLKHKTEQQTSTPFMEDHHQHFSQEELDDFTTDYEPHEEISSQTIQGTVFP
RISHKLSSTATKMNQRKLPKDLGLFSSISMGQQGIRRPQYKLDHLSQMEDDAEEYSINLKEQPKCDQNLK
KWPSFKNKMKVNKNSKHGKKLHNLHPPENSRLGQKKFLPTHTSRNKNLLDPLYYRCTQRGGDNTHELNEA
MGNLDVLQQFEMDYANQPTYDEFSDKIISLPPSKLKYFRGLTKENGIKVCKQISKFDMKVQKPHDLSLST
KEKFKHGPSYQKVKQLKTQAVKEPLNDPKSLPEIEGKNVCKPDVLENLYGAIAFKDFIVHKGYDMPGILQ
KLFMKKGWNYNSVNTPIPSVLKYHEMIQKKMDDEDDENSGNELY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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