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Report for CCDS53144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53144.1 Public Mus musculus X Eda 23 108 98 CCDS HistoryNCBI Gene:13607Re-query CCDS DB by CCDS ID:53144.1Re-query CCDS DB by GeneID:13607See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 53144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071453.2 ENSMUSP00000071397.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071453.2Link to Ensembl Protein Viewer:ENSMUSP00000071397.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071453Re-query CCDS DB by Protein ID:ENSMUSP00000071397
Original member Current member NCBI NM_001177940.1 NP_001171411.1 Accepted alive Link to Nucleotide Sequence:NM_001177940.1Link to Protein Sequence:NP_001171411.1Re-query CCDS DB by Nucleotide ID:NM_001177940Re-query CCDS DB by Protein ID:NP_001171411Link to BLAST:NP_001171411.1

Chromosomal Locations for CCDS 53144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99975781 99976176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100309994 100310099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100389702 100389881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100391341 100391375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100392333 100392384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100395019 100395149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 100396905 100397156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1152 nt):
ATGGGCTACCCAGAGGTAGAGCGCAGGGAACCCCTGCCTGCGGCAGCGCCAAGGGAGCGGGGCAGCCAGG
GCTGCGGCTGTCGCGGGGCCCCTGCTCGGGCGGGCGAAGGGAACAGCTGCCGGCTCTTCCTGGGTTTCTT
TGGCCTCTCGCTGGCCCTCCACCTGCTGACGCTGTGCTGCTACCTAGAGTTGCGGTCCGAATTGCGGCGG
GAACGGGGAACCGAGTCCCGCCTCGGTGGCCCGGGTGCTCCTGGCACCTCTGGCACCCTAAGCAGCCCTG
GGAGCCTCGACCCGGTGGGTCCCATCACCCGCCACCTGGGGCAGCCGTCCTTTCAACAGCAGCCTTTGGA
ACCGGGAGAAGATCCACTCCCCCCTGACTCCCAGGACCGGCACCAGATGGCCCTCCTGAATTTCTTCTTT
CCTGATGAAAAGGCATATTCTGAAGAGGAAAGTAGGCGTGTTCGCCGCAATAAGAGAAGCAAAAGTGGTG
AAGGAGCAGATGGAAAGAAGGCAGGGCCACCTGGGCCCAACGGCCCCCCAGGACCTCCAGGACCTCCGGG
ACCCCAGGGACCTCCAGGGATTCCAGGAATTCCTGGGATTCCAGGAACAACTGTTATGGGACCACCTGGC
CCACCTGGCCCTCCTGGTCCTCAAGGACCCCCTGGCCTCCAAGGACCTTCTGGTGCTGCTGATAAAACTG
GAACTCGGGAAAATCAGCCAGCTGTGGTGCATCTGCAGGGCCAAGGGTCAGCAATTCAAGTCAAAAATGA
TCTTTCAGGTGGAGTGCTCAATGACTGGTCTCGCATCACTATGAACCCTAAGGTGTTTAAACTACATCCC
CGCAGCGGGGAGCTGGAGGTACTGGTGGACGGCACCTACTTCATCTATAGTCAGGTAGAAGTCTACTACA
TCAACTTCACTGACTTTGCCAGCTACGAGGTGGTGGTGGATGAGAAGCCCTTCCTGCAGTGCACCCGCAG
CATTGAGACAGGGAAGACCAACTACAACACTTGCTATACTGCAGGCGTGTGCCTCCTCAAGGCCAGGCAG
AAAATCGCCGTGAAGATGGTGCACGCTGACATCTCTATCAATATGAGCAAGCACACCACCTTCTTCGGGG
CCATCAGGCTGGGCGAAGCCCCTGCATCCTAG

Translation (383 aa):
MGYPEVERREPLPAAAPRERGSQGCGCRGAPARAGEGNSCRLFLGFFGLSLALHLLTLCCYLELRSELRR
ERGTESRLGGPGAPGTSGTLSSPGSLDPVGPITRHLGQPSFQQQPLEPGEDPLPPDSQDRHQMALLNFFF
PDEKAYSEEESRRVRRNKRSKSGEGADGKKAGPPGPNGPPGPPGPPGPQGPPGIPGIPGIPGTTVMGPPG
PPGPPGPQGPPGLQGPSGAADKTGTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHP
RSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQ
KIAVKMVHADISINMSKHTTFFGAIRLGEAPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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