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Report for CCDS50724.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50724.1 Public Mus musculus 2 Smox 23 108 98 CCDS HistoryNCBI Gene:228608Re-query CCDS DB by CCDS ID:50724.1Re-query CCDS DB by GeneID:228608See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50724.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110183.8 ENSMUSP00000105812.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110183.8Link to Ensembl Protein Viewer:ENSMUSP00000105812.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110183Re-query CCDS DB by Protein ID:ENSMUSP00000105812
Original member NCBI NM_001177838.1 NP_001171309.1 Updated not alive Link to Nucleotide Sequence:NM_001177838.1Link to Protein Sequence:NP_001171309.1Re-query CCDS DB by Nucleotide ID:NM_001177838Re-query CCDS DB by Protein ID:NP_001171309
Current member NCBI NM_001177838.2 NP_001171309.1 Accepted alive Link to Nucleotide Sequence:NM_001177838.2Link to Protein Sequence:NP_001171309.1Re-query CCDS DB by Nucleotide ID:NM_001177838Re-query CCDS DB by Protein ID:NP_001171309Link to BLAST:NP_001171309.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171309.1 248 Q99K82-5 248 100% 0 0

Chromosomal Locations for CCDS 50724.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 131512010 131512217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131516217 131516443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131520095 131520268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 131524743 131524880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGCAAAGTTGTGAATCCAGTGGCGACAGTGCGGATGACCCTCTCAGTCGTGGCCTACGGAGAAGGGGAC
AGCCTCGTGTGGTGGTGATCGGTGCTGGCTTGGCTGGCCTGGCTGCAGCTAGAGCCCTTCTGGAGCAGGG
CTTCACGGATGTCACTGTGCTTGAGGCTTCCAGCCACATTGGGGGCCGTGTGCAGAGTGTGAGGCTTGGA
GACACCACCTTTGAGCTGGGAGCCACCTGGATCCATGGATCCCACGGGAATCCTATCTATCAACTAGCAG
AAGCCAATGGCCTTTTGGAAGAGACAACAGATGGGGAGCGCAGTGTGGGCCGCATCAGCCTTTACTCCAA
GAATGGCGTGGCCTGCTACCTTACCAACCGTGGCTGCCGCATCCCCAAGGACGTGGTTGAGGAATTCAGC
GATTTATACAACGAGGTCTATAACATGACCCAGGAGTTCTTCCGGCATGGTAAACCAGTCAATGCCGAGA
GTCAGAACAGCGTCGGGGTGTTCACCCGGGAGAAGGTGCGGAATCGCATCAGGGATGACCCTGACGACAC
AGAGGCCACCAAGCGCCTGAAGCTCGCCATGATCCAGCAGTACCTGAAGCCCATGCAGGTGCTCTTCTCC
GGGGAGGCCACACACCGCAAGTACTACTCCACCACCCACGGTGCTCTGCTCTCTGGCCAGCGCGAGGCCG
CCCGGCTCATCGAGATGTACCGAGACCTCTTCCAGCAGGGGCCCTGA

Translation (248 aa):
MQSCESSGDSADDPLSRGLRRRGQPRVVVIGAGLAGLAAARALLEQGFTDVTVLEASSHIGGRVQSVRLG
DTTFELGATWIHGSHGNPIYQLAEANGLLEETTDGERSVGRISLYSKNGVACYLTNRGCRIPKDVVEEFS
DLYNEVYNMTQEFFRHGKPVNAESQNSVGVFTREKVRNRIRDDPDDTEATKRLKLAMIQQYLKPMQVLFS
GEATHRKYYSTTHGALLSGQREAARLIEMYRDLFQQGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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