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Report for CCDS26109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26109.1 Public Mus musculus 12 Gpr68 23 108 98 CCDS HistoryNCBI Gene:238377Re-query CCDS DB by CCDS ID:26109.1Re-query CCDS DB by GeneID:238377See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 26109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053668.9 ENSMUSP00000057510.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053668.9Link to Ensembl Protein Viewer:ENSMUSP00000057510.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053668Re-query CCDS DB by Protein ID:ENSMUSP00000057510
Original member Current member EBI ENSMUST00000110065.7 ENSMUSP00000105692.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110065.7Link to Ensembl Protein Viewer:ENSMUSP00000105692.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110065Re-query CCDS DB by Protein ID:ENSMUSP00000105692
Original member Current member EBI ENSMUST00000110066.7 ENSMUSP00000105693.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110066.7Link to Ensembl Protein Viewer:ENSMUSP00000105693.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110066Re-query CCDS DB by Protein ID:ENSMUSP00000105693
Original member Current member NCBI NM_001177673.1 NP_001171144.1 Accepted alive Link to Nucleotide Sequence:NM_001177673.1Link to Protein Sequence:NP_001171144.1Re-query CCDS DB by Nucleotide ID:NM_001177673Re-query CCDS DB by Protein ID:NP_001171144Link to BLAST:NP_001171144.1
Original member NCBI NM_001177674.1 NP_001171145.1 Updated not alive Link to Nucleotide Sequence:NM_001177674.1Link to Protein Sequence:NP_001171145.1Re-query CCDS DB by Nucleotide ID:NM_001177674Re-query CCDS DB by Protein ID:NP_001171145
Current member NCBI NM_001177674.2 NP_001171145.1 Accepted alive Link to Nucleotide Sequence:NM_001177674.2Link to Protein Sequence:NP_001171145.1Re-query CCDS DB by Nucleotide ID:NM_001177674Re-query CCDS DB by Protein ID:NP_001171145Link to BLAST:NP_001171145.1
Original member Current member NCBI NM_175493.4 NP_780702.1 Accepted alive Link to Nucleotide Sequence:NM_175493.4Link to Protein Sequence:NP_780702.1Re-query CCDS DB by Nucleotide ID:NM_175493Re-query CCDS DB by Protein ID:NP_780702Link to BLAST:NP_780702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171144.1 365 Q8BFQ3 365 100% 0 0
NP_001171145.1 365 Q8BFQ3 365 100% 0 0
NP_780702.1 365 Q8BFQ3 365 100% 0 0

Chromosomal Locations for CCDS 26109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100878186 100879283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1098 nt):
ATGGGGAACATCACTACAGAAAACTCCTCACTATCTTGCCCCATCGACCACACCATCCACCAGACACTAG
CCCCAGTGGTCTATGTGACCGTGCTGGTGGTGGGCTTCCCAGCCAACTGCCTGTCCCTCTACTTCGGGTA
CTTGCAGATCAAGGCCCGGAATGAGCTGGGAGTGTACCTGTGTAACCTGACCATTGCAGACCTGTTCTAT
ATCTGTTCACTTCCCTTCTGGCTGCAGTACGTGCTTCAGCACGACGACTGGTCCCATGGTGACCTATCCT
GCCAGGTGTGTGGCATCCTCCTCTATGAGAACATTTACATCAGCGTGGGCTTCCTCTGCTGCATCTCCAT
CGACCGCTACCTGGCTGTGGCCCACCCCTTCCGCTTCCACCAGTTCCGCACCCTGAAGGCAGCCGTGGGT
GTCAGTGTGCTCATCTGGGCCAAGGAGCTGCTGACCAGCATCTACTTCCTCAATCACAAGGAGGTCATTG
AGGACGAGGACCAGCACCGAGTCTGCTTTGAGCATTACCCTATCCAGGCCTGGCAGCGTAGCATCAACTA
CTACCGCTTCCTGGTGGGCTTTCTCTTCCCCATCTGCCTGCTGCTGGCCTCCTACCAGGGCATCCTGCGG
GCTGTGCGCCGCAGCCACGGCACACAGAAGAGCCGCAAGGACCAGATTCAGCGGCTGGTGCTCAGCACCG
TGGTCATCTTCCTGGCTTGCTTTCTACCCTACCACGTGCTGCTGCTGGTACGCAGCCTCTGGGAGAGAAA
CTGTGAGTTTGCCAAGAGCATCTTCAACGTCTATCACTTCTCCCTCCTCCTCACCAGCTTCAACTGTGTA
GCTGACCCGGTGCTGTACTGCTTTGTCAGTGAGACCACTCACAGGGACCTAGCCCGCCTCCGAGGAGCCT
GCCTAGCTGTCCTTACCTGCTCTAGGACAAGCAGGGCCAGGGAGGCCTACCCTCTGGGTGCCCCTGAGGC
CTCTGGGAAAAGTGGGGCCCAGGGCGAGGAACCTGAATTGTTAACCAAGCTCCACTCAGCCTTCCAGACC
CCTAGCTCACTGGGAGTGGGAGGGCCCTCCACAGTGGGGTTGGCCTAG

Translation (365 aa):
MGNITTENSSLSCPIDHTIHQTLAPVVYVTVLVVGFPANCLSLYFGYLQIKARNELGVYLCNLTIADLFY
ICSLPFWLQYVLQHDDWSHGDLSCQVCGILLYENIYISVGFLCCISIDRYLAVAHPFRFHQFRTLKAAVG
VSVLIWAKELLTSIYFLNHKEVIEDEDQHRVCFEHYPIQAWQRSINYYRFLVGFLFPICLLLASYQGILR
AVRRSHGTQKSRKDQIQRLVLSTVVIFLACFLPYHVLLLVRSLWERNCEFAKSIFNVYHFSLLLTSFNCV
ADPVLYCFVSETTHRDLARLRGACLAVLTCSRTSRAREAYPLGAPEASGKSGAQGEEPELLTKLHSAFQT
PSSLGVGGPSTVGLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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