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Report for CCDS17798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17798.1 Public Mus musculus 3 Rwdd3 23 108 98 CCDS HistoryNCBI Gene:66568Re-query CCDS DB by CCDS ID:17798.1Re-query CCDS DB by GeneID:66568See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039761.11 ENSMUSP00000040826.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039761.11Link to Ensembl Protein Viewer:ENSMUSP00000040826.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039761Re-query CCDS DB by Protein ID:ENSMUSP00000040826
Original member Current member EBI ENSMUST00000106466.9 ENSMUSP00000102074.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106466.9Link to Ensembl Protein Viewer:ENSMUSP00000102074.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106466Re-query CCDS DB by Protein ID:ENSMUSP00000102074
Original member Current member NCBI NM_028456.3 NP_082732.2 Accepted alive Link to Nucleotide Sequence:NM_028456.3Link to Protein Sequence:NP_082732.2Re-query CCDS DB by Nucleotide ID:NM_028456Re-query CCDS DB by Protein ID:NP_082732Link to BLAST:NP_082732.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082732.2 267 Q8VIL2 267 99.2509% 0 2

Chromosomal Locations for CCDS 17798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121156188 121156302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121156401 121156516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121158768 121159255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121171592 121171676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGGTGGAGGAGGTGCGGCAGGAGCTCTCGGCGCTGGCCGCGATCTTCTGCGGGCCCAACGAGTGGGAGA
TGTTGAGCTGTTCAGAGACAGATGGGGCTGTGTTTAGAATTCACACAACAGCTGAAGGACTTGTGGGTGA
GGATGTGCCCTTAGAGTTGGCGTTCCATTTACCAGTTGGTTACCCTTTGTGTCTACCCGGCATCTCGGTT
ACCTCGGAACATCTGACCAGGGCCCAGTGTGTTACCGCGAAGGAGAAGTTACTTGGAGAAGCCAGGAAGC
TCGTGTCAGAACCGATGGTTCACGAGCTGGTTCTTTGGATCCAGCAGAATCTCAGACTTGTCCTCAGCCA
GCCGGAGACCGCCAGCAGCCATGAGAAGTGCACTTTGCCAGAAAGTGCGACGGGGGACGATGGACCGTGG
ATGACTCTTTTGCGTTTAGATCACATGAGAGCGAGGACTAAATATGTCAAAGCCGTGGAGAAGTGGGCTT
CAGAGTTAAGGCTGACAGGAAGACTGATGTTCATGGGTAAATTAATACTGATTTTACTACAAGGAGACAG
AAGCAACATCAAGGAGTACCTGATTCTTCAGAAAACCTCCAAAGTAGATGTGGACTCAAGTGGAAAGAAA
TGCAAAGAGAAAATGATTAGTGTACTGTCTGAAACAAAAGTACAAACGGAACACAAAAGGTTTCTGGCGT
TTGAAGTCAAAGAGTATTCAACACTGGAGGAGTTACAAAAGGAATTCGGAGCTGCAGGACTTGGGGAGCT
CTTCTCAGAGTGTGTACTGGGGCTGGTGAAATGA

Translation (267 aa):
MVEEVRQELSALAAIFCGPNEWEMLSCSETDGAVFRIHTTAEGLVGEDVPLELAFHLPVGYPLCLPGISV
TSEHLTRAQCVTAKEKLLGEARKLVSEPMVHELVLWIQQNLRLVLSQPETASSHEKCTLPESATGDDGPW
MTLLRLDHMRARTKYVKAVEKWASELRLTGRLMFMGKLILILLQGDRSNIKEYLILQKTSKVDVDSSGKK
CKEKMISVLSETKVQTEHKRFLAFEVKEYSTLEELQKEFGAAGLGELFSECVLGLVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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