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Report for CCDS50119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50119.1 Public Mus musculus 17 Mymx 23 108 98 CCDS HistoryNCBI Gene:653016Re-query CCDS DB by CCDS ID:50119.1Re-query CCDS DB by GeneID:653016See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113529.3 ENSMUSP00000109157.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113529.3Link to Ensembl Protein Viewer:ENSMUSP00000109157.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113529Re-query CCDS DB by Protein ID:ENSMUSP00000109157
Original member Current member EBI ENSMUST00000178858.2 ENSMUSP00000137630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178858.2Link to Ensembl Protein Viewer:ENSMUSP00000137630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178858Re-query CCDS DB by Protein ID:ENSMUSP00000137630
Original member Current member EBI ENSMUST00000208801.1 ENSMUSP00000146823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208801.1Link to Ensembl Protein Viewer:ENSMUSP00000146823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208801Re-query CCDS DB by Protein ID:ENSMUSP00000146823
Original member Current member NCBI NM_001177468.1 NP_001170939.1 Accepted alive Link to Nucleotide Sequence:NM_001177468.1Link to Protein Sequence:NP_001170939.1Re-query CCDS DB by Nucleotide ID:NM_001177468Re-query CCDS DB by Protein ID:NP_001170939Link to BLAST:NP_001170939.1
Original member Current member NCBI NM_001177469.1 NP_001170940.1 Accepted alive Link to Nucleotide Sequence:NM_001177469.1Link to Protein Sequence:NP_001170940.1Re-query CCDS DB by Nucleotide ID:NM_001177469Re-query CCDS DB by Protein ID:NP_001170940Link to BLAST:NP_001170940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001170939.1 84 Q2Q5T5-1 84 100% 0 0
NP_001170940.1 84 Q2Q5T5-1 84 100% 0 0

Chromosomal Locations for CCDS 50119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45601417 45601671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (255 nt):
ATGCCCGTTCCATTGCTCCCGATGGTGCTTCGATCGCTGCTGTCCCGCCTGCTGCTGCCTGTTGCCCGCC
TGGCCCGGCAGCACCTCCTGCCCTTGCTGCGCCGGCTGGCCCGCCGACTGAGCTCCCAAGACATGAGAGA
GGCTCTGCTGAGCTGTCTGCTCTTTGTCCTCAGCCAGCAACAGCCACCGGATTCTGGAGAGGCCTCCAGA
GTGGACCACTCCCAGAGGAAGGAGAGATTGGGCCCCCAGAAGTGA

Translation (84 aa):
MPVPLLPMVLRSLLSRLLLPVARLARQHLLPLLRRLARRLSSQDMREALLSCLLFVLSQQQPPDSGEASR
VDHSQRKERLGPQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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