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Report for CCDS28720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28720.1 Public Mus musculus 17 H2-M10.2 23 108 98 CCDS HistoryNCBI Gene:333715Re-query CCDS DB by CCDS ID:28720.1Re-query CCDS DB by GeneID:333715See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023845.6 ENSMUSP00000023845.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023845.6Link to Ensembl Protein Viewer:ENSMUSP00000023845.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023845Re-query CCDS DB by Protein ID:ENSMUSP00000023845
Original member Current member NCBI NM_177923.1 NP_808591.1 Accepted alive Link to Nucleotide Sequence:NM_177923.1Link to Protein Sequence:NP_808591.1Re-query CCDS DB by Nucleotide ID:NM_177923Re-query CCDS DB by Protein ID:NP_808591Link to BLAST:NP_808591.1

Chromosomal Locations for CCDS 28720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36284281 36284381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36284508 36284783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36285339 36285614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36285846 36286115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36286355 36286421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGAACCCTGGACCCTGCAACTTCCTCCTCCTCTTGGTGGCCTTGGACCTGACCCAGTATTGTGCAGGCT
CACACTGGCTGCAGACTTTCAATACTGTGATTTTGAAGCATGGCACGTTGGAGCCCCGGATCATCCAGGT
CGGCTATGTAGACTCCATACAGTATCAGGGATTTGACAGCAAAGAACCGACTGCAAGGATGCAACCTCGG
GCTGCATGGATGGAGCAGGAGCCACCTGAATATTGGGAGAAGGAGACAGCACAAGTCCTGCGCTTGTCAC
TGACAAACGAAAGACTTCTTAGGTACATGATGATCTACAATGAACAGAGCAATGAGGAATATCACACCCT
GCAGGAAGTGTTTGGCTGCAATGTGGATAATGATGGGAGCTTCCTCGGCGGTCTCTACCGGCTCACCTAC
TACGGCTATGAGTTCATCAACCTGAATGAGGACCTGAGTTCCTGGACAGCACAGGGAGAGGCAGCTGGGT
TCCTGAAGACAGACTTGGTGAATGTAGGCGCAGCGGAAGGCTGGAGGACCTACCTGCTAGGGGAGTGCAC
AGAAAGGCTTCTTAGATGCCTGGACCTCGGAAAGGAGACCTTGCTGCGCTCTGATGCCCCCCGAACACAT
GTGACCCACCATGTAAGACCTGAAGGGAATGTCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCAGCTG
ACATCACCCTGACCTGGAAGAGAGATGGGAAAAACTACACCCAGGACATGGAGCTGCCAGACACCAGGCC
TGCAGGGGATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTTCCCTCTGGAGAAGAGCTGAGATACACA
TGTCATGTGCACCATGAAGGGTTACCTGAGCCTCTCACTCTAAAATGGGAGCCTCCACAAACCATCCCCA
TCATAGCAATTCTCATCGGCCTGGTTCTTGGAACTTTCCTGGTAGGAACTGTGGTGGTTTTTCTGGTGTG
GAAGAAATAA

Translation (329 aa):
MNPGPCNFLLLLVALDLTQYCAGSHWLQTFNTVILKHGTLEPRIIQVGYVDSIQYQGFDSKEPTARMQPR
AAWMEQEPPEYWEKETAQVLRLSLTNERLLRYMMIYNEQSNEEYHTLQEVFGCNVDNDGSFLGGLYRLTY
YGYEFINLNEDLSSWTAQGEAAGFLKTDLVNVGAAEGWRTYLLGECTERLLRCLDLGKETLLRSDAPRTH
VTHHVRPEGNVTLRCWALGFYPADITLTWKRDGKNYTQDMELPDTRPAGDGTFQKWAAVVVPSGEELRYT
CHVHHEGLPEPLTLKWEPPQTIPIIAILIGLVLGTFLVGTVVVFLVWKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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