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Report for CCDS604.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
604.1 Public Homo sapiens 1 PLPP3 24 110 108 CCDS HistoryNCBI Gene:8613Re-query CCDS DB by CCDS ID:604.1Re-query CCDS DB by GeneID:8613See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 604.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371250.4 ENSP00000360296.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371250.4Link to Ensembl Protein Viewer:ENSP00000360296.3Re-query CCDS DB by Nucleotide ID:ENST00000371250Re-query CCDS DB by Protein ID:ENSP00000360296
Original member Current member NCBI NM_003713.5 NP_003704.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003713.5Link to Protein Sequence:NP_003704.3Re-query CCDS DB by Nucleotide ID:NM_003713Re-query CCDS DB by Protein ID:NP_003704Link to BLAST:NP_003704.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003704.3 311 O14495 311 100% 0 0

Chromosomal Locations for CCDS 604.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 56496551 56496676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56511976 56512152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56523823 56523880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56524277 56524554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56536955 56537112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56578878 56579016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGCAAAACTACAAGTACGACAAAGCGATCGTCCCGGAGAGCAAGAACGGCGGCAGCCCGGCGCTCAACA
ACAACCCGAGGAGGAGCGGCAGCAAGCGGGTGCTGCTCATCTGCCTCGACCTCTTCTGCCTCTTCATGGC
GGGCCTCCCCTTCCTCATCATCGAGACAAGCACCATCAAGCCTTACCACCGAGGGTTTTACTGCAATGAT
GAGAGCATCAAGTACCCACTGAAAACTGGTGAGACAATAAATGACGCTGTGCTCTGTGCCGTGGGGATCG
TCATTGCCATCCTCGCGATCATCACGGGGGAATTCTACCGGATCTATTACCTGAAGAAGTCGCGGTCGAC
GATTCAGAACCCCTACGTGGCAGCACTCTATAAGCAAGTGGGCTGCTTCCTCTTTGGCTGTGCCATCAGC
CAGTCTTTCACAGACATTGCCAAAGTGTCCATAGGGCGCCTGCGTCCTCACTTCTTGAGTGTCTGCAACC
CTGATTTCAGCCAGATCAACTGCTCTGAAGGCTACATTCAGAACTACAGATGCAGAGGTGATGACAGCAA
AGTCCAGGAAGCCAGGAAGTCCTTCTTCTCTGGCCATGCCTCCTTCTCCATGTACACTATGCTGTATTTG
GTGCTATACCTGCAGGCCCGCTTCACTTGGCGAGGAGCCCGCCTGCTCCGGCCCCTCCTGCAGTTCACCT
TGATCATGATGGCCTTCTACACGGGACTGTCTCGCGTATCAGACCACAAGCACCATCCCAGTGATGTTCT
GGCAGGATTTGCTCAAGGAGCCCTGGTGGCCTGCTGCATAGTTTTCTTCGTGTCTGACCTCTTCAAGACT
AAGACGACGCTCTCCCTGCCTGCCCCTGCTATCCGGAAGGAAATCCTTTCACCTGTGGACATTATTGACA
GGAACAATCACCACAACATGATGTAG

Translation (311 aa):
MQNYKYDKAIVPESKNGGSPALNNNPRRSGSKRVLLICLDLFCLFMAGLPFLIIETSTIKPYHRGFYCND
ESIKYPLKTGETINDAVLCAVGIVIAILAIITGEFYRIYYLKKSRSTIQNPYVAALYKQVGCFLFGCAIS
QSFTDIAKVSIGRLRPHFLSVCNPDFSQINCSEGYIQNYRCRGDDSKVQEARKSFFSGHASFSMYTMLYL
VLYLQARFTWRGARLLRPLLQFTLIMMAFYTGLSRVSDHKHHPSDVLAGFAQGALVACCIVFFVSDLFKT
KTTLSLPAPAIRKEILSPVDIIDRNNHHNMM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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