NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2413.1 Public Homo sapiens 2 PNKD 24 110 108 CCDS HistoryNCBI Gene:25953Re-query CCDS DB by CCDS ID:2413.1Re-query CCDS DB by GeneID:25953See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2413.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258362.7 ENSP00000258362.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258362.7Link to Ensembl Protein Viewer:ENSP00000258362.3Re-query CCDS DB by Nucleotide ID:ENST00000258362Re-query CCDS DB by Protein ID:ENSP00000258362
Original member Current member NCBI NM_022572.4 NP_072094.1 Accepted alive Link to Nucleotide Sequence:NM_022572.4Link to Protein Sequence:NP_072094.1Re-query CCDS DB by Nucleotide ID:NM_022572Re-query CCDS DB by Protein ID:NP_072094Link to BLAST:NP_072094.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_072094.1 361 Q8N490-3 361 100% 0 0

Chromosomal Locations for CCDS 2413.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218323268 218323431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218339783 218339898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218340029 218340141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218340728 218340786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218341534 218341626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218341981 218342144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218343500 218343586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218344455 218344570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218344808 218344981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGCTTGGCAGGGCTGGCCCGCGGCGTGGCAGTGGGTCGCCGGCTGCTGGCTCCTCCTCGTCCTTGTCC
TC
GTCCTACTTGTGAGCCCCCGCGGCTGCCGAGCGCGGCGGGGCCTCCGCGGTCTGCTCATGGCGCACAG
C
CAGCGGCTGCTCTTCCGAATCGGGTACAGCCTGTACACCCGCACCTGGCTCGGGTACCTCTTCTACCGA
CAG
CAGCTGCGCAGGGCTCGGAATCGCTACCCTAAAGGCCACTCGAAAACCCAGCCCCGCCTCTTCAATG
GA
GTGAAGGTGCTTCCCATCCCTGTCCTCTCGGACAACTACAGCTACCTCATCATCGACACCCAGGCCCA
G
CTGGCTGTGGCTGTGGACCCTTCAGACCCTCGGGCTGTGCAGGCTTCCATTGAAAAGGAAGGGGTCACC
TTG
GTCGCCATTCTGTGTACTCACAAGCACTGGGACCACAGTGGAGGGAACCGTGACCTCAGCCGGCGGC
AC
CGGGACTGTCGGGTGTACGGGAGCCCTCAGGACGGCATCCCCTACCTCACCCATCCCCTGTGTCATCA
A
GATGTGGTCAGCGTGGGACGGCTTCAGATCCGGGCCCTGGCTACACCTGGCCACACACAAGGCCATCTG
GTC
TACCTACTGGATGGGGAGCCCTACAAGGGTCCCTCCTGCCTCTTCTCAGGGGACCTGCTCTTCCTCT
CT
GGCTGTGGGCGGACCTTTGAGGGCAATGCAGAGACCATGCTGAGCTCACTGGACACTGTGCTGGGGCT
A
GGGGATGACACCCTTCTGTGGCCTGGTCATGAGTATGCAGAGGAGAACCTGGGCTTTGCAGGTGTGGTG
GAG
CCCGAGAACCTGGCCCGGGAGAGGAAGATGCAGTGGGTGCAGCGGCAGCGGCTGGAGCGCAAGGGCA
CG
TGCCCATCTACCCTGGGAGAGGAGCGCTCCTACAACCCGTTCCTGAGAACCCACTGCCTGGCGCTACA
G
GAGGCTCTGGGGCCGGGGCCGGGCCCCACTGGGGATGATGACTACTCCCGGGCCCAGCTCCTGGAAGAG
CTC
CGCCGGCTGAAGGATATGCACAAGAGCAAGTGA


Translation (361 aa):
MAWQGWPAAWQWVAGCWLLLVLVLVLLVSPRGCRARRGLRGLLMAHSQRLLFRIGYSLYTRTWLGYLFYR
Q
QLRRARNRYPKGHSKTQPRLFN
GVKVLPIPVLSDNYSYLIIDTQAQLAVAVDPSDPRAVQASIEKEGVT
L
VAILCTHKH
WDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALATPGHTQGHL
V
YLLDGEPYKGPSCLFSGDLLFLSGC
GRTFEGNAETMLSSLDTVLGLGDDTLLWPGHEYAEENLGFAGVV
E
PENLARERKMQWVQRQRLERKGT
CPSTLGEERSYNPFLRTHCLALQEALGPGPGPTGDDDYSRAQLLEE
L
RRLKDMHKSK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser