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Report for CCDS22803.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22803.1 Public Mus musculus 9 Mmp13 23 108 98 CCDS HistoryNCBI Gene:17386Re-query CCDS DB by CCDS ID:22803.1Re-query CCDS DB by GeneID:17386See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22803.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015394.9 ENSMUSP00000015394.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015394.9Link to Ensembl Protein Viewer:ENSMUSP00000015394.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000015394Re-query CCDS DB by Protein ID:ENSMUSP00000015394
Original member Current member NCBI NM_008607.2 NP_032633.1 Accepted alive Link to Nucleotide Sequence:NM_008607.2Link to Protein Sequence:NP_032633.1Re-query CCDS DB by Nucleotide ID:NM_008607Re-query CCDS DB by Protein ID:NP_032633Link to BLAST:NP_032633.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032633.1 472 P33435 472 100% 0 0

Chromosomal Locations for CCDS 22803.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 7272555 7272677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7272765 7273006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7273893 7274041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7274209 7274334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7276547 7276708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7277911 7278028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7278831 7278964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7280126 7280285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7280833 7280936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 7282018 7282118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGCATTCAGCTATCCTGGCCACCTTCTTCTTGTTGAGCTGGACTCCCTGTTGGTCCCTGCCCCTTCCCT
ATGGTGATGATGATGATGATGACCTGTCTGAGGAAGACCTTGTGTTTGCAGAGCACTACTTGAAATCATA
CTACCATCCTGCGACTCTTGCGGGAATCCTGAAGAAGTCTACAGTGACCTCCACAGTTGACAGGCTCCGA
GAAATGCAATCTTTCTTTGGCTTAGAGGTGACTGGCAAACTTGATGATCCCACCTTAGACATCATGAGAA
AACCAAGATGTGGAGTGCCTGATGTGGGTGAATACAATGTTTTCCCTAGAACACTCAAATGGTCCCAAAC
GAACTTAACTTACAGGATTGTGAACTATACTCCTGATATGTCCCATTCTGAAGTGGAGAAGGCCTTCAGA
AAAGCCTTCAAGGTCTGGTCTGATGTGACACCACTGAATTTCACCAGAATCTATGATGGCACTGCTGACA
TCATGATATCTTTTGGGACTAAAGAACATGGTGACTTCTACCCATTTGATGGACCTTCTGGTCTTCTGGC
ACACGCTTTTCCTCCTGGACCAAACTATGGTGGGGATGCCCATTTTGATGATGATGAAACCTGGACAAGC
AGTTCCAAAGGCTACAACTTGTTTATTGTTGCTGCCCATGAGCTTGGCCACTCCCTAGGTCTGGATCACT
CCAAGGACCCAGGAGCCCTGATGTTTCCCATCTATACCTACACTGGCAAAAGCCATTTCATGCTTCCTGA
TGATGACGTTCAAGGAATTCAGTTTCTTTATGGTCCAGGCGATGAAGACCCCAACCCTAAGCATCCCAAA
ACACCAGAGAAGTGTGACCCAGCCCTATCCCTTGATGCCATTACCAGTCTCCGAGGAGAAACTATGATCT
TTAAAGACAGATTCTTCTGGCGCCTGCACCCTCAGCAGGTTGAGGCTGAGCTCTTTTTGACAAAGTCCTT
TTGGCCAGAACTTCCCAACCATGTGGATGCTGCATATGAACATCCATCCCGTGACCTTATGTTTATCTTT
AGAGGGAGAAAATTCTGGGCTCTGAATGGTTATGACATTCTGGAAGGTTATCCCAGAAAAATATCTGACC
TGGGATTCCCAAAAGAGGTGAAGAGACTGAGCGCTGCGGTTCACTTTGAGAACACGGGGAAGACCCTCTT
CTTCTCTGAGAACCACGTGTGGAGTTATGATGATGTTAACCAGACTATGGACAAAGATTATCCCCGCCTC
ATAGAAGAGGAATTCCCTGGAATTGGCAACAAAGTAGATGCTGTCTATGAGAAAAATGGCTATATCTACT
TTTTCAATGGGCCCATACAGTTTGAATACAGTATCTGGAGTAATCGCATTGTGAGAGTCATGCCAACAAA
TTCCATATTGTGGTGTTAA

Translation (472 aa):
MHSAILATFFLLSWTPCWSLPLPYGDDDDDDLSEEDLVFAEHYLKSYYHPATLAGILKKSTVTSTVDRLR
EMQSFFGLEVTGKLDDPTLDIMRKPRCGVPDVGEYNVFPRTLKWSQTNLTYRIVNYTPDMSHSEVEKAFR
KAFKVWSDVTPLNFTRIYDGTADIMISFGTKEHGDFYPFDGPSGLLAHAFPPGPNYGGDAHFDDDETWTS
SSKGYNLFIVAAHELGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQFLYGPGDEDPNPKHPK
TPEKCDPALSLDAITSLRGETMIFKDRFFWRLHPQQVEAELFLTKSFWPELPNHVDAAYEHPSRDLMFIF
RGRKFWALNGYDILEGYPRKISDLGFPKEVKRLSAAVHFENTGKTLFFSENHVWSYDDVNQTMDKDYPRL
IEEEFPGIGNKVDAVYEKNGYIYFFNGPIQFEYSIWSNRIVRVMPTNSILWC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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