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Report for CCDS39990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39990.1 Public Mus musculus 7 Rlbp1 23 108 98 CCDS HistoryNCBI Gene:19771Re-query CCDS DB by CCDS ID:39990.1Re-query CCDS DB by GeneID:19771See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39990.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053718.14 ENSMUSP00000054545.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053718.14Link to Ensembl Protein Viewer:ENSMUSP00000054545.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053718Re-query CCDS DB by Protein ID:ENSMUSP00000054545
Original member Current member EBI ENSMUST00000179243.2 ENSMUSP00000137143.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179243.2Link to Ensembl Protein Viewer:ENSMUSP00000137143.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179243Re-query CCDS DB by Protein ID:ENSMUSP00000137143
Original member Current member NCBI NM_001173483.1 NP_001166954.1 Accepted alive Link to Nucleotide Sequence:NM_001173483.1Link to Protein Sequence:NP_001166954.1Re-query CCDS DB by Nucleotide ID:NM_001173483Re-query CCDS DB by Protein ID:NP_001166954Link to BLAST:NP_001166954.1
Original member Current member NCBI NM_001357450.1 NP_001344379.1 Accepted alive Link to Nucleotide Sequence:NM_001357450.1Link to Protein Sequence:NP_001344379.1Re-query CCDS DB by Nucleotide ID:NM_001357450Re-query CCDS DB by Protein ID:NP_001344379Link to BLAST:NP_001344379.1
Original member Current member NCBI NM_020599.2 NP_065624.1 Accepted alive Link to Nucleotide Sequence:NM_020599.2Link to Protein Sequence:NP_065624.1Re-query CCDS DB by Nucleotide ID:NM_020599Re-query CCDS DB by Protein ID:NP_065624Link to BLAST:NP_065624.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166954.1 317 Q9Z275 317 100% 0 0
NP_001344379.1 317 Q9Z275 317 100% 0 0
NP_065624.1 317 Q9Z275 317 100% 0 0

Chromosomal Locations for CCDS 39990.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79375560 79375718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79375897 79376007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79377227 79377385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79379959 79380137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79381633 79381837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79383612 79383740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79383934 79383945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGTCAGACGGGGTGGGCACTTTCCGCATGGTTCCTGAAGAGGAGCAGGAGCTCCGAGCACAACTGGAGC
AGCTCACAACCAAGGATCATGGTCCTGTCTTTGGCCCATGCAGCCAGCTGCCCCGCCACACTTTGCAGAA
GGCCAAGGATGAGCTGAATGAAAAGGAGGAGACCCGGGAGGAAGCGGTGAGGGAGCTACAGGAGCTGGTA
CAGGCACAGGCAGCTTCTGGCGAGGAATTGGCCCTGGCAGTGGCTGAGAGGGTGCAGGCAAGAGACAGCG
CCTTCCTCCTGCGCTTCATCCGTGCCCGCAAGTTCGATGTGGGTCGTGCTTATGAGCTGCTCAAAGGCTA
TGTGAACTTCCGCCTCCAGTACCCTGAACTCTTCGATAGTCTCTCCATGGAGGCTCTCCGCTGCACTATC
GAGGCCGGATACCCTGGTGTCCTTTCCAGTCGGGACAAGTATGGTCGAGTGGTTATGCTCTTCAACATCG
AAAACTGGCACTGTGAAGAAGTGACCTTTGATGAGATCTTACAGGCATATTGTTTCATTTTGGAGAAACT
GCTGGAAAATGAGGAAACCCAAATCAACGGCTTCTGTATTGTTGAGAACTTCAAGGGCTTCACCATGCAG
CAGGCAGCAGGGCTCCGCCCCTCGGATCTCAAGAAGATGGTGGACATGCTCCAGGATTCATTCCCAGCCA
GGTTCAAAGCTATCCACTTCATCCACCAGCCATGGTACTTCACCACCACCTATAATGTGGTCAAGCCCTT
CTTGAAGAACAAGCTGCTACAGAGGGTCTTTGTTCACGGAGATGACCTGGATGGCTTCTTCCAGGAGATT
GATGAGAACATCCTGCCTGCTGACTTTGGGGGTACACTGCCCAAGTACGACGGCAAAGTTGTTGCTGAGC
AGCTCTTTGGTCCCCGGGCTGAAGTTGAGAACACAGCCTTATGA

Translation (317 aa):
MSDGVGTFRMVPEEEQELRAQLEQLTTKDHGPVFGPCSQLPRHTLQKAKDELNEKEETREEAVRELQELV
QAQAASGEELALAVAERVQARDSAFLLRFIRARKFDVGRAYELLKGYVNFRLQYPELFDSLSMEALRCTI
EAGYPGVLSSRDKYGRVVMLFNIENWHCEEVTFDEILQAYCFILEKLLENEETQINGFCIVENFKGFTMQ
QAAGLRPSDLKKMVDMLQDSFPARFKAIHFIHQPWYFTTTYNVVKPFLKNKLLQRVFVHGDDLDGFFQEI
DENILPADFGGTLPKYDGKVVAEQLFGPRAEVENTAL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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