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Report for CCDS23386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23386.1 Public Mus musculus 9 Nt5e 23 108 98 CCDS HistoryNCBI Gene:23959Re-query CCDS DB by CCDS ID:23386.1Re-query CCDS DB by GeneID:23959See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034992.7 ENSMUSP00000034992.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034992.7Link to Ensembl Protein Viewer:ENSMUSP00000034992.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034992Re-query CCDS DB by Protein ID:ENSMUSP00000034992
Original member Current member NCBI NM_011851.4 NP_035981.1 Accepted alive Link to Nucleotide Sequence:NM_011851.4Link to Protein Sequence:NP_035981.1Re-query CCDS DB by Nucleotide ID:NM_011851Re-query CCDS DB by Protein ID:NP_035981Link to BLAST:NP_035981.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035981.1 576 Q61503 576 100% 0 0

Chromosomal Locations for CCDS 23386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 88327686 88328030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88352263 88352485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88355587 88355775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88363436 88363633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88364668 88364822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88366362 88366467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88367231 88367380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88369046 88369246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88370154 88370317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGCGTCCCGCGGCCGCTAAGGTACCCAAGTGGCTGCTTCTCGCACTGAGCGCTCTACTACCACAGTGGC
CCGCAGCCAGTGCCTGGGAGCTCACGATCCTGCACACAAACGACGTGCACAGCCGGCTAGAGCAGACCAG
CGATGACTCCACCAAGTGCCTCAACGCCAGCCTGTGTGTGGGCGGCGTGGCCCGGCTCTTTACCAAGGTG
CAGCAGATCCGCAAGGAAGAACCCAACGTGCTGTTTTTGGATGCCGGAGACCAGTACCAGGGCACCATCT
GGTTCACCGTTTACAAAGGCCTTGAAGTGGCACACTTCATGAACATCCTGGGCTACGATGCTATGGCACT
GGGAAATCATGAATTTGATAACGGTGTGGAAGGACTGATTGATCCCCTCCTCAGAAACGTTAAATTTCCA
ATTCTGAGCGCAAACATTAAGGCACGGGGGCCTCTAGCACATCAGATATCTGGACTTTTTCTGCCATCTA
AAGTTCTCTCTGTTGGCGGTGAGGTTGTGGGGATTGTTGGATATACTTCAAAGGAAACCCCTTTCCTCTC
AAATCCAGGGACAAATTTAGTCTTTGAAGATGAAATCTCTGCATTGCAGCCTGAAGTAGATAAACTAAAG
ACGCTAAATGTGAATAAGATCATCGCCCTGGGGCACTCTGGTTTTGAGATGGACAAACTTATCGCTCAGA
AAGTTCGAGGTGTGGACATCGTGGTGGGAGGACACTCCAACACCTTTCTCTACACAGGAAATCCACCTTC
CAAAGAAGTGCCTGCGGGGAAGTACCCATTCATAGTCACCGCAGATGATGGACGGCAGGTGCCTGTGGTC
CAGGCCTATGCCTTTGGCAAATACCTGGGCTACCTGAAGGTTGAGTTTGATGATAAAGGCAATGTTATCA
CTTCCTATGGAAATCCCATTCTTCTCAACAGCAGCATTCCTGAAGATGCGACCATCAAAGCAGACATTAA
CCAATGGAGGATAAAATTAGATAATTATTCTACCCAGGAACTCGGGAGAACGATCGTCTACCTGGATGGC
TCCACTCAGACGTGCCGCTTCAGGGAATGCAACATGGGAAACCTGATCTGTGATGCCATGATTAACAACA
ACCTCAGACACCCAGATGAAATGTTTTGGAACCACGTGTCCATGTGCATTGTAAACGGAGGTGGCATCCG
GTCCCCCATTGATGAGAAGAACAATGGTACCATCACCTGGGAGAACCTGGCTGCTGTGCTGCCCTTTGGA
GGGACATTTGACCTCGTCCAATTAAAAGGGTCCACCCTGAAGAAGGCTTTTGAGCACAGCGTGCATCGCT
ATGGCCAGTCCACCGGAGAGTTCCTGCAAGTGGGTGGAATCCATGTGGTGTACGATATTAACCGAAAGCC
CTGGAACAGAGTGGTCCAATTAGAAGTTCTCTGCACCAAGTGTCGAGTGCCCATCTATGAGCCTCTTGAA
ATGGATAAAGTGTATAAAGTGACCCTCCCAAGCTATCTGGCCAACGGTGGAGATGGATTCCAGATGATAA
AAGATGAATTACTAAAGCATGACTCTGGTGATCAAGATATCAGCGTGGTTTCTGAATACATCTCAAAAAT
GAAAGTAGTTTACCCAGCCGTTGAAGGGCGGATCAAGTTCTCTGCAGCAAGTCATTACCAGGGAAGCTTT
CCTTTAGTAATTCTTTCATTTTGGGCAATGATCCTTATTTTGTACCAATAA

Translation (576 aa):
MRPAAAKVPKWLLLALSALLPQWPAASAWELTILHTNDVHSRLEQTSDDSTKCLNASLCVGGVARLFTKV
QQIRKEEPNVLFLDAGDQYQGTIWFTVYKGLEVAHFMNILGYDAMALGNHEFDNGVEGLIDPLLRNVKFP
ILSANIKARGPLAHQISGLFLPSKVLSVGGEVVGIVGYTSKETPFLSNPGTNLVFEDEISALQPEVDKLK
TLNVNKIIALGHSGFEMDKLIAQKVRGVDIVVGGHSNTFLYTGNPPSKEVPAGKYPFIVTADDGRQVPVV
QAYAFGKYLGYLKVEFDDKGNVITSYGNPILLNSSIPEDATIKADINQWRIKLDNYSTQELGRTIVYLDG
STQTCRFRECNMGNLICDAMINNNLRHPDEMFWNHVSMCIVNGGGIRSPIDEKNNGTITWENLAAVLPFG
GTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDINRKPWNRVVQLEVLCTKCRVPIYEPLE
MDKVYKVTLPSYLANGGDGFQMIKDELLKHDSGDQDISVVSEYISKMKVVYPAVEGRIKFSAASHYQGSF
PLVILSFWAMILILYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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