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Report for CCDS46337.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46337.2 Public Homo sapiens 2 FBXO41 24 110 108 CCDS HistoryNCBI Gene:150726Re-query CCDS DB by CCDS ID:46337.2Re-query CCDS DB by GeneID:150726See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 46337.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript, protein and homology data.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46337.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295133.9 ENSP00000295133.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000295133.9Link to Ensembl Protein Viewer:ENSP00000295133.6Re-query CCDS DB by Nucleotide ID:ENST00000295133Re-query CCDS DB by Protein ID:ENSP00000295133
Original member Current member EBI ENST00000521871.5 ENSP00000428646.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521871.5Link to Ensembl Protein Viewer:ENSP00000428646.1Re-query CCDS DB by Nucleotide ID:ENST00000521871Re-query CCDS DB by Protein ID:ENSP00000428646
Original member Current member EBI ENST00000520530.3 ENSP00000430968.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000520530.3Link to Ensembl Protein Viewer:ENSP00000430968.2Re-query CCDS DB by Nucleotide ID:ENST00000520530Re-query CCDS DB by Protein ID:ENSP00000430968
Original member Current member NCBI NM_001080410.4 NP_001073879.2 Accepted alive Link to Nucleotide Sequence:NM_001080410.4Link to Protein Sequence:NP_001073879.2Re-query CCDS DB by Nucleotide ID:NM_001080410Re-query CCDS DB by Protein ID:NP_001073879Link to BLAST:NP_001073879.2
Original member Current member NCBI NM_001371389.2 NP_001358318.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371389.2Link to Protein Sequence:NP_001358318.1Re-query CCDS DB by Nucleotide ID:NM_001371389Re-query CCDS DB by Protein ID:NP_001358318Link to BLAST:NP_001358318.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073879.2 875 Q8TF61 875 100% 0 0
NP_001358318.1 875 Q8TF61 875 100% 0 0

Chromosomal Locations for CCDS 46337.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73258982 73259044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73259181 73259296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73260389 73260547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73260740 73260858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73263213 73263308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73263678 73263830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73263938 73264053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73264278 73264519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73265282 73265640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73265893 73265966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73266457 73266682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73268726 73269630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGCCTCGCTGGACCTGCCGTACCGCTGCCCCCGCTGCGGGGAGCACAAGCGCTTCCGGAGCCTGTCGT
CGCTGCGCGCGCACCTGGAGTACAGCCACACCTACGAGACGCTCTACATCCTCTCCAAGACCAACAGCAT
CTGCGACGGCGCCGCCGCCGCCGCGGCCGCCGCCGCCGCTGCCTCGGGGTTCCCGCTGGCTCCCGAGCCC
GCCGCCCTGCTGGCCGTGCCCGGCGCCCGGCGAGAGGTCTTCGAGAGCACTTCCTTCCAGGGCAAGGAGC
AGGCGGCCGGGCCGTCGCCCGCGGCGCCGCACCTGCTGCACCACCACCATCACCACGCTCCCCTCGCCCA
CTTCCCCGGCGACCTGGTGCCCGCTAGCCTGCCCTGTGAGGAGTTGGCCGAGCCGGGCCTTGTGCCCGCC
GCAGCAGCGCGCTATGCGCTGCGCGAGATCGAGATCCCGCTGGGGGAGCTGTTCGCCCGCAAGTCCGTGG
CGTCCTCGGCGTGCTCGACGCCGCCGCCTGGCCCCGGCCCCGGCCCTTGCCCCGGGCCTGCCTCCGCTTC
GCCCGCGTCCCCCTCACCCGCTGATGTGGCCTACGAAGAGGGCCTGGCGCGCCTCAAGATCCGCGCGCTG
GAGAAGCTGGAGGTGGACCGGCGGCTGGAGCGGCTGAGCGAGGAGGTGGAGCAGAAGATCGCGGGCCAGG
TGGGCCGGCTGCAGGCCGAGCTGGAGCGCAAGGCGGCCGAACTGGAGACTGCGCGGCAGGAGAGTGCGAG
GCTCGGGCGCGAGAAGGAGGAGCTGGAGGAGCGCGCGTCTGAGCTCTCCCGCCAGGTGGACGTGAGCGTA
GAGCTGCTGGCCTCACTCAAGCAGGACCTGGTGCACAAGGAACAGGAGCTGAGCCGCAAGCAGCAGGAGG
TGGTGCAGATCGACCAGTTCCTGAAGGAGACGGCGGCGCGGGAGGCCAGCGCCAAGCTGCGGCTGCAGCA
GTTCATTGAGGAGCTCCTTGAGCGGGCTGACCGTGCCGAGCGGCAGCTGCAGGTCATCAGCAGCAGCTGT
GGCAGCACGCCCAGCGCCAGCCTGGGCCGTGGAGGTGGGGGCGGTGGTGCTGGACCCAATGCCCGGGGCC
CAGGCAGAATGCGAGAACACCACGTGGGCCCGGCCGTGCCTAACACATATGCAGTGTCACGGCATGGCTC
CTCTCCGAGCACAGGGGCCTCCAGCCGTGTGCCAGCCGCATCCCAGAGCTCAGGCTGCTATGACAGTGAC
AGTCTGGAGCTGCCCAGGCCAGAGGAGGGGGCCCCTGAGGACAGTGGCCCTGGGGGCTTGGGCACACGGG
CCCAGGCTGCCAACGGGGGCTCAGAGCGGTCCCAGCCCCCTCGCAGCTCAGGCCTGCGGCGCCAGGCCAT
CCAGAACTGGCAGCGCAGACCCCGCCGACACAGCACTGAGGGGGAAGAGGGTGATGTCTCCGACGTTGGC
TCCCGAACCACTGAGTCAGAGGCTGAGGGCCCGTTGGATGCGCCCCGCCCCGGGCCTGCTATGGCTGGGC
CATTGAGCAGCTGCCGGCTCTCAGCCCGCCCCGAGGGAGGCAGTGGGCGGGGTCGGCGAGCAGAGAGGGT
CAGCCCCTCACGCTCCAATGAGGTCATCAGCCCAGAGATCCTGAAGATGCGAGCTGCCCTCTTCTGCATC
TTCACCTACCTGGACACGCGCACACTGCTGCATGCTGCCGAGGTCTGCCGGGACTGGCGCTTCGTGGCCC
GCCACCCCGCAGTCTGGACAAGGGTGCTGCTTGAGAATGCCCGTGTCTGCTCCAAGTTCCTGGCAATGCT
GGCTCAGTGGTGCACCCAGGCCCACTCTCTGACGCTGCAGAACTTGAAGCCCCGGCAGCGGGGAAAGAAG
GAGAGCAAGGAGGAGTATGCCCGGAGCACCCGGGGCTGCCTGGAAGCTGGGCTGGAGTCCCTGCTGAAGG
CAGCTGGGGGGAACCTGCTGATCCTGCGCATCTCCCACTGTCCAAACATCCTCACCGACCGCTCGCTCTG
GCTGGCCAGCTGCTACTGCCGTGCCCTGCAGGCTGTCACGTACAGGAGTGCCACAGACCCCGTGGGCCAT
GAGGTCATTTGGGCCCTGGGCGCAGGCTGCAGAGAGATCGTCTCCCTCCAAGTGGCACCACTTCACCCCT
GCCAGCAGCCCACACGCTTCAGTAACCGCTGCCTGCAGATGATTGGTCGCTGTTGGCCCCACCTGCGGGC
CCTGGGGGTCGGGGGTGCCGGCTGTGGGGTGCAGGGCCTGGCATCACTCGCGAGAAACTGCATGCGGCTG
CAGGTCCTGGAGCTTGACCACGTGTCAGAGATCACCCAGGAGGTGGCAGCAGAGGTCTGCCGGGAAGGCC
TGAAGGGACTGGAGATGCTGGTGCTCACGGCGACTCCCGTCACCCCTAAGGCCCTACTGCACTTCAACAG
CATCTGCCGGAACCTCAAGTCCATTGTGGTCCAGATTGGGATTGCGGATTATTTCAAAGAGCCCAGCAGC
CCTGAGGCCCAGAAGCTGTTTGAGGACATGGTGACAAAACTCCAGGCTCTGCGACGGAGGCCCGGCTTCT
CTAAGATTCTGCACATCAAGGTGGAAGGCGGCTGCTAA

Translation (875 aa):
MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAAAAAAAASGFPLAPEP
AALLAVPGARREVFESTSFQGKEQAAGPSPAAPHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPA
AAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCPGPASASPASPSPADVAYEEGLARLKIRAL
EKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSV
ELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSC
GSTPSASLGRGGGGGGAGPNARGPGRMREHHVGPAVPNTYAVSRHGSSPSTGASSRVPAASQSSGCYDSD
SLELPRPEEGAPEDSGPGGLGTRAQAANGGSERSQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVG
SRTTESEAEGPLDAPRPGPAMAGPLSSCRLSARPEGGSGRGRRAERVSPSRSNEVISPEILKMRAALFCI
FTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKK
ESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGH
EVIWALGAGCREIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRL
QVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSS
PEAQKLFEDMVTKLQALRRRPGFSKILHIKVEGGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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