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Report for CCDS21261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21261.1 Public Mus musculus 7 Sphk2 23 108 98 CCDS HistoryNCBI Gene:56632Re-query CCDS DB by CCDS ID:21261.1Re-query CCDS DB by GeneID:56632See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072836.6 ENSMUSP00000072615.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072836.6Link to Ensembl Protein Viewer:ENSMUSP00000072615.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072836Re-query CCDS DB by Protein ID:ENSMUSP00000072615
Original member Current member EBI ENSMUST00000107737.10 ENSMUSP00000103366.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107737.10Link to Ensembl Protein Viewer:ENSMUSP00000103366.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107737Re-query CCDS DB by Protein ID:ENSMUSP00000103366
Original member Current member EBI ENSMUST00000210060.1 ENSMUSP00000147391.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210060.1Link to Ensembl Protein Viewer:ENSMUSP00000147391.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210060Re-query CCDS DB by Protein ID:ENSMUSP00000147391
Original member Current member NCBI NM_001172561.1 NP_001166032.1 Accepted alive Link to Nucleotide Sequence:NM_001172561.1Link to Protein Sequence:NP_001166032.1Re-query CCDS DB by Nucleotide ID:NM_001172561Re-query CCDS DB by Protein ID:NP_001166032Link to BLAST:NP_001166032.1
Original member Current member NCBI NM_020011.5 NP_064395.2 Accepted alive Link to Nucleotide Sequence:NM_020011.5Link to Protein Sequence:NP_064395.2Re-query CCDS DB by Nucleotide ID:NM_020011Re-query CCDS DB by Protein ID:NP_064395Link to BLAST:NP_064395.2
Original member Current member NCBI NM_203280.3 NP_975009.1 Accepted alive Link to Nucleotide Sequence:NM_203280.3Link to Protein Sequence:NP_975009.1Re-query CCDS DB by Nucleotide ID:NM_203280Re-query CCDS DB by Protein ID:NP_975009Link to BLAST:NP_975009.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001166032.1 617 Q9JIA7 617 100% 0 0
NP_064395.2 617 Q9JIA7 617 100% 0 0
NP_975009.1 617 Q9JIA7 617 100% 0 0

Chromosomal Locations for CCDS 21261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45710725 45711811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45712058 45712173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45712257 45712351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45712456 45712605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45713260 45713665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGGCCCCACCACCACTACTGCCAGTGGCTGCCAGCACTCCAATCCTGCACGGCGAGTTTGGTTCCTACC
CGGCCAACGGCCCACGGTTTGCCCTCACCCTCACAACACAAGCCCTACACATACAGCGACTACGCCCAAA
GCCAGAAGCCCGGCCCCGAGATGGTCTAGTCTCTCTGGATGAGGTCTCGGGCTGTGGCACCCTGCAGAGC
CGTAGCCCCGAGGACACTGCAGCCTACTTCTGCATCTACACCTACCCACGTGGCCGTCGAGGGGGCCGGC
GCAGAGCTACGCGGACCTTCCGGGCGGATGGGGCCACCACTTATGAGGAGAATCGTGCAGAGGCCCAGCG
CTGGGCCACTGCCCTCACGTGTCTCCTCCGAGGAGTGCCTCTGTCAGGGGACCAGGAAATCACCCCTGAA
TTGCTGCCCCGGAAGCCCAGGCTGCTCATATTGGTCAATCCCTTTGGGGGGCGGGGCCTGGCCTGGCAGC
GCTGTATGGACCACGTGGTGCCAATGATCTCTGAAGCTGGGCTGTCCTTCAACCTCATACAGACAGAACG
ACAGAACCATGCCCGTGAGCTGGTGCAGGGGTTAAGCCTGAGTGAGTGGGAAGGCATTGTCACTGTGTCT
GGAGACGGGCTGCTTTACGAGGTGCTGAATGGGCTCCTTGATCGGCCAGACTGGGAGGATGCCGTGCGGA
TGCCCATTGGTGTCCTCCCCTGTGGATCGGGCAATGCGCTAGCTGGGGCGGTGAACCATCATGGCGGGTT
TGAGCAGGTTGTCGGTGTTGACCTGTTGCTCAACTGCTCGCTTCTTCTCTGCCGTGGTGGCAGCCATCCT
CTGGACCTGCTCTCTGTGACGCTAGCCTCGGGATCCCGCTGTTTTTCCTTCCTGTCAGTGGCCTGGGGAT
TCTTGTCAGATGTGGACATTCACAGTGAGCGCTTCAGGGCCCTGGGCAGCGCTCGATTCACACTGGGTGC
AGTGCTAGGCCTGGCCTCGTTGCATACCTACCGTGGACGCCTCTCCTACCTCCCCGCTACCACAGAACCA
GCCTTGCCCATCCCAGGCCACAGTCTGCCTCGAGCCAAGTCAGAACTAGTCTTGGCTCCAGCCCCAGCCC
CCGCCGCCACCCACTCGCCTCTACATCGATCTGTGTCTGACCTGCCCCTGCCCCTTCCCCAGCCTGCCTT
GGTCTCCCCTGGCTCCCCTGAGCCCCTGCCTGACCTGTCCCTCAATGGTGGTGGTCCAGAGCTGACTGGA
GACTGGGGAGGAGCTGGGGATGCACCTCTGTCCCCAGACCCACTGCTGCCTTCATCCCCCAACGCTCTCA
AAACAGCTCAGCTTTCACCCATCGCTGAAGGGCCCCCAGAAATGCCAGCATCTTCGGGGTTCCTGCCTCC
CACCCACAGTGCCCCAGAAGCCTCTACCTGGGGCCCAGTGGACCACCTCCTCCCTCCCCTGGGCTCTCCA
CTGCCCCAAGACTGGGTGACAATAGAGGGGGAGTTTGTACTCATGTTGGGCATCTTGCCGAGCCACCTCT
GCGCAGACCTGATGGCAGCCCCACATGCACGCTTTGATGATGGCGTTGTGCACCTGTGTTGGGTGCGGAG
CGGCATCTCACGGGCTGCACTTCTACGCATTTTGCTGGCCATGGAGCATGGAAACCACTTCAGCCTGGGC
TGCCCCCATCTGGGCTATGCTGCAGCACGTGCCTTCCGCCTTGAACCACTCACGCCTCGTGGCCTGCTCA
CTGTAGATGGGGAGTTAGTGGAGTATGGGCCAATACAGGCGCAGGTGCACCCAGGTCTCGCCACGCTGCT
CACTGGGCCTGCAGGTCAAAAGCCACAAGCCTGA

Translation (617 aa):
MAPPPLLPVAASTPILHGEFGSYPANGPRFALTLTTQALHIQRLRPKPEARPRDGLVSLDEVSGCGTLQS
RSPEDTAAYFCIYTYPRGRRGGRRRATRTFRADGATTYEENRAEAQRWATALTCLLRGVPLSGDQEITPE
LLPRKPRLLILVNPFGGRGLAWQRCMDHVVPMISEAGLSFNLIQTERQNHARELVQGLSLSEWEGIVTVS
GDGLLYEVLNGLLDRPDWEDAVRMPIGVLPCGSGNALAGAVNHHGGFEQVVGVDLLLNCSLLLCRGGSHP
LDLLSVTLASGSRCFSFLSVAWGFLSDVDIHSERFRALGSARFTLGAVLGLASLHTYRGRLSYLPATTEP
ALPIPGHSLPRAKSELVLAPAPAPAATHSPLHRSVSDLPLPLPQPALVSPGSPEPLPDLSLNGGGPELTG
DWGGAGDAPLSPDPLLPSSPNALKTAQLSPIAEGPPEMPASSGFLPPTHSAPEASTWGPVDHLLPPLGSP
LPQDWVTIEGEFVLMLGILPSHLCADLMAAPHARFDDGVVHLCWVRSGISRAALLRILLAMEHGNHFSLG
CPHLGYAAARAFRLEPLTPRGLLTVDGELVEYGPIQAQVHPGLATLLTGPAGQKPQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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