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Report for CCDS58463.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58463.1 Public Homo sapiens 16 SLC6A2 24 110 108 CCDS HistoryNCBI Gene:6530Re-query CCDS DB by CCDS ID:58463.1Re-query CCDS DB by GeneID:6530See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58463.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000567238.1 ENSP00000457375.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000567238.1Link to Ensembl Protein Viewer:ENSP00000457375.1Re-query CCDS DB by Nucleotide ID:ENST00000567238Re-query CCDS DB by Protein ID:ENSP00000457375
Original member Current member NCBI NM_001172502.1 NP_001165973.1 Accepted alive Link to Nucleotide Sequence:NM_001172502.1Link to Protein Sequence:NP_001165973.1Re-query CCDS DB by Nucleotide ID:NM_001172502Re-query CCDS DB by Protein ID:NP_001165973Link to BLAST:NP_001165973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165973.1 512 P23975-3 512 100% 0 0

Chromosomal Locations for CCDS 58463.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 55671847 55672175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55685143 55685281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55691918 55692052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55694010 55694113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55695278 55695402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55696225 55696337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55697897 55698025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55698469 55698568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55699554 55699654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55700139 55700306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55701863 55701934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 55702323 55702346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGGGAGTGCAGTGGTGGAGCCACACCCAAGGAGAGGTGGCTGTGGGGCTGGGCCTGGGAGACTCCTACC
TTACCCCCTGTCCCTGCCCAGGCGTTGGCTATGCTGTCATCCTGATCGCCCTGTACGTTGGCTTCTACTA
CAACGTCATCATCGCCTGGTCACTCTACTACCTCTTCTCCTCCTTCACCCTCAACCTGCCCTGGACCGAC
TGTGGCCACACCTGGAACAGCCCCAACTGTACCGACCCCAAGCTCCTCAATGGCTCCGTGCTTGGCAACC
ACACCAAGTACTCCAAGTACAAGTTCACGCCGGCAGCCGAGTTTTATGAGCGTGGTGTCCTGCACCTTCA
CGAGAGCAGCGGGATTCATGACATCGGCCTGCCCCAGTGGCAGCTCTTGCTCTGTCTGATGGTCGTCGTC
ATCGTCTTGTATTTTAGCCTCTGGAAAGGGGTGAAGACATCAGGAAAGGTGGTGTGGATCACAGCCACGC
TGCCTTACTTCGTGCTGTTCGTGCTCCTGGTCCATGGCGTCACGCTGCCCGGAGCCTCCAATGGCATCAA
TGCCTACCTGCACATCGACTTCTACCGCTTGAAAGAGGCCACGGTATGGATTGATGCCGCAACTCAGATA
TTTTTTTCCTTGGGGGCTGGATTTGGAGTATTGATTGCATTTGCCAGTTACAACAAATTTGACAACAACT
GTTACAGGGATGCCCTGCTGACCAGCAGCATCAACTGTATCACCAGCTTCGTCTCTGGGTTCGCCATCTT
CTCCATCCTTGGTTACATGGCCCATGAACACAAGGTCAACATTGAGGATGTGGCCACAGAAGGAGCTGGC
CTAGTGTTCATCCTGTATCCAGAGGCCATTTCTACCCTGTCTGGATCTACATTCTGGGCTGTTGTGTTTT
TCGTCATGCTCCTGGCGCTGGGCCTTGACAGCTCAATGGGAGGCATGGAGGCTGTCATCACGGGCCTGGC
AGATGACTTCCAGGTCCTGAAGCGACACCGGAAACTCTTCACATTTGGCGTCACCTTCAGCACTTTCCTT
CTCGCCCTGTTCTGCATAACCAAGGGTGGAATTTACGTCTTGACCCTCCTGGACACCTTTGCTGCGGGCA
CCTCCATCCTTTTTGCTGTCCTCATGGAAGCCATCGGAGTTTCCTGGTTTTATGGAGTGGACAGGTTCAG
CAACGACATCCAGCAGATGATGGGGTTCAGGCCGGGTCTATACTGGAGACTGTGCTGGAAGTTCGTCAGT
CCTGCCTTCCTCCTGTTCGTGGTTGTGGTCAGCATCATCAACTTCAAGCCACTCACCTACGACGACTACA
TCTTCCCGCCCTGGGCCAACTGGGTGGGGTGGGGCATCGCCCTGTCCTCCATGGTCCTGGTGCCCATCTA
CGTCATCTATAAGTTCCTCAGCACGCAGGGCTCTCTTTGGGAGAGACTGGCCTATGGCATCACGCCAGAG
AACGAGCACCACCTGGTGGCTCAGAGGGACATCAGACAGTTCCAGTTGCAACACTGGCTGGCCATCTGA

Translation (512 aa):
MGVQWWSHTQGEVAVGLGLGDSYLTPCPCPGVGYAVILIALYVGFYYNVIIAWSLYYLFSSFTLNLPWTD
CGHTWNSPNCTDPKLLNGSVLGNHTKYSKYKFTPAAEFYERGVLHLHESSGIHDIGLPQWQLLLCLMVVV
IVLYFSLWKGVKTSGKVVWITATLPYFVLFVLLVHGVTLPGASNGINAYLHIDFYRLKEATVWIDAATQI
FFSLGAGFGVLIAFASYNKFDNNCYRDALLTSSINCITSFVSGFAIFSILGYMAHEHKVNIEDVATEGAG
LVFILYPEAISTLSGSTFWAVVFFVMLLALGLDSSMGGMEAVITGLADDFQVLKRHRKLFTFGVTFSTFL
LALFCITKGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSNDIQQMMGFRPGLYWRLCWKFVS
PAFLLFVVVVSIINFKPLTYDDYIFPPWANWVGWGIALSSMVLVPIYVIYKFLSTQGSLWERLAYGITPE
NEHHLVAQRDIRQFQLQHWLAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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