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Report for CCDS14680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14680.1 Public Homo sapiens X SLITRK2 24 110 108 CCDS HistoryNCBI Gene:84631Re-query CCDS DB by CCDS ID:14680.1Re-query CCDS DB by GeneID:84631See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14680.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335565.6 ENSP00000334374.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335565.6Link to Ensembl Protein Viewer:ENSP00000334374.5Re-query CCDS DB by Nucleotide ID:ENST00000335565Re-query CCDS DB by Protein ID:ENSP00000334374
Original member Current member EBI ENST00000370490.1 ENSP00000359521.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370490.1Link to Ensembl Protein Viewer:ENSP00000359521.1Re-query CCDS DB by Nucleotide ID:ENST00000370490Re-query CCDS DB by Protein ID:ENSP00000359521
Original member Current member NCBI NM_001144003.3 NP_001137475.1 Accepted alive Link to Nucleotide Sequence:NM_001144003.3Link to Protein Sequence:NP_001137475.1Re-query CCDS DB by Nucleotide ID:NM_001144003Re-query CCDS DB by Protein ID:NP_001137475Link to BLAST:NP_001137475.1
Original member Current member NCBI NM_001144004.3 NP_001137476.1 Accepted alive Link to Nucleotide Sequence:NM_001144004.3Link to Protein Sequence:NP_001137476.1Re-query CCDS DB by Nucleotide ID:NM_001144004Re-query CCDS DB by Protein ID:NP_001137476Link to BLAST:NP_001137476.1
Original member Current member NCBI NM_001144005.3 NP_001137477.1 Accepted alive Link to Nucleotide Sequence:NM_001144005.3Link to Protein Sequence:NP_001137477.1Re-query CCDS DB by Nucleotide ID:NM_001144005Re-query CCDS DB by Protein ID:NP_001137477Link to BLAST:NP_001137477.1
Original member Current member NCBI NM_001144006.2 NP_001137478.1 Accepted alive Link to Nucleotide Sequence:NM_001144006.2Link to Protein Sequence:NP_001137478.1Re-query CCDS DB by Nucleotide ID:NM_001144006Re-query CCDS DB by Protein ID:NP_001137478Link to BLAST:NP_001137478.1
Original member Current member NCBI NM_001144008.2 NP_001137480.1 Accepted alive Link to Nucleotide Sequence:NM_001144008.2Link to Protein Sequence:NP_001137480.1Re-query CCDS DB by Nucleotide ID:NM_001144008Re-query CCDS DB by Protein ID:NP_001137480Link to BLAST:NP_001137480.1
Original member Current member NCBI NM_001144009.2 NP_001137481.1 Accepted alive Link to Nucleotide Sequence:NM_001144009.2Link to Protein Sequence:NP_001137481.1Re-query CCDS DB by Nucleotide ID:NM_001144009Re-query CCDS DB by Protein ID:NP_001137481Link to BLAST:NP_001137481.1
Original member Current member NCBI NM_001144010.2 NP_001137482.1 Accepted alive Link to Nucleotide Sequence:NM_001144010.2Link to Protein Sequence:NP_001137482.1Re-query CCDS DB by Nucleotide ID:NM_001144010Re-query CCDS DB by Protein ID:NP_001137482Link to BLAST:NP_001137482.1
Original member Current member NCBI NM_032539.5 NP_115928.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032539.5Link to Protein Sequence:NP_115928.1Re-query CCDS DB by Nucleotide ID:NM_032539Re-query CCDS DB by Protein ID:NP_115928Link to BLAST:NP_115928.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137475.1 845 Q9H156-1 845 100% 0 0
NP_001137476.1 845 Q9H156-1 845 100% 0 0
NP_001137477.1 845 Q9H156-1 845 100% 0 0
NP_001137478.1 845 Q9H156-1 845 100% 0 0
NP_001137480.1 845 Q9H156-1 845 100% 0 0
NP_001137481.1 845 Q9H156-1 845 100% 0 0
NP_001137482.1 845 Q9H156-1 845 100% 0 0
NP_115928.1 845 Q9H156-1 845 100% 0 0

Chromosomal Locations for CCDS 14680.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 145822426 145824963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2538 nt):
ATGCTGAGCGGCGTTTGGTTCCTCAGTGTGTTAACCGTGGCCGGGATCTTACAGACAGAGAGTCGCAAAA
CTGCCAAAGACATTTGCAAGATCCGCTGTCTGTGCGAAGAAAAGGAAAACGTACTGAATATCAACTGTGA
GAACAAAGGATTTACAACAGTTAGCCTGCTCCAGCCCCCCCAGTATCGAATCTATCAGCTTTTTCTCAAT
GGAAACCTCTTGACAAGACTGTATCCAAACGAATTTGTCAATTACTCCAACGCGGTGACTCTTCACCTAG
GTAACAACGGGTTACAGGAGATCCGAACGGGGGCATTCAGTGGCCTGAAAACTCTCAAAAGACTGCATCT
CAACAACAACAAGCTTGAGATATTGAGGGAGGACACCTTCCTAGGCCTGGAGAGCCTGGAGTATCTCCAG
GCCGACTACAATTACATCAGTGCCATCGAGGCTGGGGCATTCAGCAAACTTAACAAGCTCAAAGTGCTCA
TCCTGAATGACAACCTTCTGCTTTCACTGCCCAGCAATGTGTTCCGCTTTGTCCTGCTGACCCACTTAGA
CCTCAGGGGGAATAGGCTAAAAGTAATGCCTTTTGCTGGCGTCCTTGAACATATTGGAGGGATCATGGAG
ATTCAGCTGGAGGAAAATCCATGGAATTGCACTTGTGACTTACTTCCTCTCAAGGCCTGGCTAGACACCA
TAACTGTTTTTGTGGGAGAGATTGTCTGTGAGACTCCCTTTAGGTTGCATGGGAAAGACGTGACCCAGCT
GACCAGGCAAGACCTCTGTCCCAGAAAAAGTGCCAGTGATTCCAGTCAGAGGGGCAGCCATGCTGACACC
CACGTCCAAAGGCTGTCACCTACAATGAATCCTGCTCTCAACCCAACCAGGGCTCCGAAAGCCAGCCGGC
CGCCCAAAATGAGAAATCGTCCAACTCCTCGAGTGACTGTGTCAAAGGACAGGCAAAGTTTTGGACCCAT
CATGGTGTACCAGACCAAGTCTCCTGTGCCTCTCACCTGTCCCAGCAGCTGTGTCTGCACCTCTCAGAGC
TCAGACAATGGTCTGAATGTAAACTGCCAAGAAAGGAAGTTCACTAATATCTCTGACCTGCAGCCCAAAC
CGACCAGTCCAAAGAAACTCTACCTAACAGGGAACTATCTTCAAACTGTCTATAAGAATGACCTCTTAGA
ATACAGTTCTTTGGACTTACTGCACTTAGGAAACAACAGGATTGCAGTCATTCAGGAAGGTGCCTTTACA
AACCTGACCAGTTTACGCAGACTTTATCTGAATGGCAATTACCTTGAAGTGCTGTACCCTTCTATGTTTG
ATGGACTGCAGAGCTTGCAATATCTCTATTTAGAGTATAATGTCATTAAGGAAATTAAGCCTCTGACCTT
TGATGCTTTGATTAACCTACAGCTACTGTTTCTGAACAACAACCTTCTTCGGTCCTTACCTGATAATATA
TTTGGGGGGACGGCCCTAACCAGGCTGAATCTGAGAAACAACCATTTTTCTCACCTGCCCGTGAAAGGGG
TTCTGGATCAGCTCCCGGCTTTCATCCAGATAGATCTGCAGGAGAACCCCTGGGACTGTACCTGTGACAT
CATGGGGCTGAAAGACTGGACAGAACATGCCAATTCCCCTGTCATCATTAATGAGGTGACTTGCGAATCT
CCTGCTAAGCATGCAGGGGAGATACTAAAATTTCTGGGGAGGGAGGCTATCTGTCCAGACAGCCCAAACT
TGTCAGATGGAACCGTCTTGTCAATGAATCACAATACAGACACACCTCGGTCGCTTAGTGTGTCTCCTAG
TTCCTATCCTGAACTACACACTGAAGTTCCACTGTCTGTCTTAATTCTGGGATTGCTTGTTGTTTTCATC
TTATCTGTCTGTTTTGGGGCTGGTTTATTCGTCTTTGTCTTGAAACGCCGAAAGGGAGTGCCGAGCGTTC
CCAGGAATACCAACAACTTAGACGTAAGCTCCTTTCAATTACAGTATGGGTCTTACAACACTGAGACTCA
CGATAAAACAGACGGCCATGTCTACAACTATATCCCCCCACCTGTGGGTCAGATGTGCCAAAACCCCATC
TACATGCAGAAGGAAGGAGACCCAGTAGCCTATTACCGAAACCTGCAAGAGTTCAGCTATAGCAACCTGG
AGGAGAAAAAAGAAGAGCCAGCCACACCTGCTTACACAATAAGTGCCACTGAGCTGCTAGAAAAGCAGGC
CACACCAAGAGAGCCTGAGCTGCTGTATCAAAATATTGCTGAGCGAGTCAAGGAACTTCCCAGCGCAGGC
CTAGTCCACTATAACTTTTGTACCTTACCTAAAAGGCAGTTTGCCCCTTCCTATGAATCTCGACGCCAAA
ACCAAGACAGAATCAATAAAACCGTTTTATATGGAACTCCCAGGAAATGCTTTGTGGGGCAGTCAAAACC
CAACCACCCTTTACTGCAAGCTAAGCCGCAATCAGAACCGGACTACCTCGAAGTTCTGGAAAAACAAACT
GCAATCAGTCAGCTGTGA

Translation (845 aa):
MLSGVWFLSVLTVAGILQTESRKTAKDICKIRCLCEEKENVLNINCENKGFTTVSLLQPPQYRIYQLFLN
GNLLTRLYPNEFVNYSNAVTLHLGNNGLQEIRTGAFSGLKTLKRLHLNNNKLEILREDTFLGLESLEYLQ
ADYNYISAIEAGAFSKLNKLKVLILNDNLLLSLPSNVFRFVLLTHLDLRGNRLKVMPFAGVLEHIGGIME
IQLEENPWNCTCDLLPLKAWLDTITVFVGEIVCETPFRLHGKDVTQLTRQDLCPRKSASDSSQRGSHADT
HVQRLSPTMNPALNPTRAPKASRPPKMRNRPTPRVTVSKDRQSFGPIMVYQTKSPVPLTCPSSCVCTSQS
SDNGLNVNCQERKFTNISDLQPKPTSPKKLYLTGNYLQTVYKNDLLEYSSLDLLHLGNNRIAVIQEGAFT
NLTSLRRLYLNGNYLEVLYPSMFDGLQSLQYLYLEYNVIKEIKPLTFDALINLQLLFLNNNLLRSLPDNI
FGGTALTRLNLRNNHFSHLPVKGVLDQLPAFIQIDLQENPWDCTCDIMGLKDWTEHANSPVIINEVTCES
PAKHAGEILKFLGREAICPDSPNLSDGTVLSMNHNTDTPRSLSVSPSSYPELHTEVPLSVLILGLLVVFI
LSVCFGAGLFVFVLKRRKGVPSVPRNTNNLDVSSFQLQYGSYNTETHDKTDGHVYNYIPPPVGQMCQNPI
YMQKEGDPVAYYRNLQEFSYSNLEEKKEEPATPAYTISATELLEKQATPREPELLYQNIAERVKELPSAG
LVHYNFCTLPKRQFAPSYESRRQNQDRINKTVLYGTPRKCFVGQSKPNHPLLQAKPQSEPDYLEVLEKQT
AISQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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