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Report for CCDS52110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52110.1 Public Mus musculus 7 Vmn1r143 23 108 98 CCDS HistoryNCBI Gene:667469Re-query CCDS DB by CCDS ID:52110.1Re-query CCDS DB by GeneID:667469See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171622.1 ENSMUSP00000127638.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171622.1Link to Ensembl Protein Viewer:ENSMUSP00000127638.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171622Re-query CCDS DB by Protein ID:ENSMUSP00000127638
Original member Current member NCBI NM_001166750.1 NP_001160222.1 Accepted alive Link to Nucleotide Sequence:NM_001166750.1Link to Protein Sequence:NP_001160222.1Re-query CCDS DB by Nucleotide ID:NM_001166750Re-query CCDS DB by Protein ID:NP_001160222Link to BLAST:NP_001160222.1

Chromosomal Locations for CCDS 52110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 22189377 22190300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTCTGCTCATGGTAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGATCCTCTTGCTTTGCCAGT
TTGGGGTTGGAACTGTGGCCAATGTCTTTCTGTTTTTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAA
ACAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATA
TTTCCAAACAACATGAGTGCTTTTGCTCCCAAAACTCCTCCAAATGAACTCAAATGTAAATTAGAATTCT
TCAGTCACATGGTGGCAAGAAGCAAAAATTTGTGTTCCACCTGTGTCCTGAGTATCCATCAGTTTGTCAC
TCTTGTTCCTGTTAATAGAGGTAAAGGTAAACTTATACTCAGAGCAAGTGTCCCAAATTTGTGGAATTAT
TCCTGCTACAGTTGTTGGTTTTACAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCAC
AGATAACAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCAT
GGTCTTCTTGCAGTTTTCCCATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTA
CTTCTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGGACGCCAGAGGCCAAG
CTGAGACCAGAGCAACCCATACTATCCTGATGCTGGTGGTCACATTTGTTAGCTTTTATCTTCTAAATTG
TATTTGTATCATCTTTCATGCCTTTTCTATACATTCTCGTCTCTTCATAAGGCTTGTCAGTGAGGTTCTG
GCTGCAGTCTTCCCCAGTATCTGTCCCTTACTGTTGATCTTCAGAGATCCTAAAGATCCTTGTTCTGTGC
TCTTCAAATGTTGA

Translation (307 aa):
MSAHGKSVKTTEEVALQILLLCQFGVGTVANVFLFFHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTI
FPNNMSAFAPKTPPNELKCKLEFFSHMVARSKNLCSTCVLSIHQFVTLVPVNRGKGKLILRASVPNLWNY
SCYSCWFYSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGMVFLQFSHDATFMSIMVWTSVSMV
LLLHRHRQRMQHILTPNQDARGQAETRATHTILMLVVTFVSFYLLNCICIIFHAFSIHSRLFIRLVSEVL
AAVFPSICPLLLIFRDPKDPCSVLFKC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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