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Report for CCDS52090.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52090.1 Public Mus musculus 7 Vmn1r122 23 108 98 CCDS HistoryNCBI Gene:435951Re-query CCDS DB by CCDS ID:52090.1Re-query CCDS DB by GeneID:435951See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52090.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164409.1 ENSMUSP00000131706.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164409.1Link to Ensembl Protein Viewer:ENSMUSP00000131706.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164409Re-query CCDS DB by Protein ID:ENSMUSP00000131706
Original member Current member NCBI NM_001166714.1 NP_001160186.1 Accepted alive Link to Nucleotide Sequence:NM_001166714.1Link to Protein Sequence:NP_001160186.1Re-query CCDS DB by Nucleotide ID:NM_001166714Re-query CCDS DB by Protein ID:NP_001160186Link to BLAST:NP_001160186.1

Chromosomal Locations for CCDS 52090.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 21133211 21134128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTCTGATCATGGTAAATCCGTGAAAACCACTGAGGAAGTGGCTCTTCAGATCCTCTTGCTTTGCCAGT
TTGGGGTTGGGACCTTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTATCCAGTCTTGACTGGTTCTAA
ACAGAGACCCAGACAGGTGATTTTAAGCCACATGTCTGTGGCCAATGCCTTGACTCTATTCCTCACTATA
TTTCCAAACAACATGATAGCTTTTGCTCCAAAAACTCCTCCAACTGAACTCAAATGTAAATTAGAATTCT
TCAGTCACATGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTATCTATCAGTTTGTCAC
TCTTGTTCTTGTTAATAGAGGTAAACTTATACTCAAAGCTAGTGTCCCAAATTTTGTGAGTTATTCTTGT
TACAGTTGTTGGTTTTTCAGTGTCTTAAGTAACATCCACATTCCAATTAAGGTCACTGGTCCACAGATAA
CAGACAATAACACTGACTCTAAAAGCAACTTGTTCTGTTCCACTTCTGGATTCATTGTAGGCATTGTCTT
CTTGCAGTTTGCCTATGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTACTTCTC
CTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAGCTGAGA
CCAGAGCAACCCGTACTATCCTGATGCTGGTGTTCACATTTGTTAGCTTTTATCTTCTAAATTTTATTTG
TATCATCTTTCATACCCTTTTAATGCATTCTCATTTCTTCATAAGGCTTGTCAGTGAGGTTCTGGCTGCA
GTCTTCCCCAGTATCTCTCCTTTTCTGTTGATCTTCAGAGATCCTAAAGATCCTTGTTCTGTGCTCTTCA
ACTGTTGA

Translation (305 aa):
MSDHGKSVKTTEEVALQILLLCQFGVGTLANVFLFVHNFYPVLTGSKQRPRQVILSHMSVANALTLFLTI
FPNNMIAFAPKTPPTELKCKLEFFSHMVARSTNLCSTCVLSIYQFVTLVLVNRGKLILKASVPNFVSYSC
YSCWFFSVLSNIHIPIKVTGPQITDNNTDSKSNLFCSTSGFIVGIVFLQFAYDATFMSIMVWTSVSMVLL
LHRHRQRMQHILTPNQNPRGQAETRATRTILMLVFTFVSFYLLNFICIIFHTLLMHSHFFIRLVSEVLAA
VFPSISPFLLIFRDPKDPCSVLFNC


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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