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Report for CCDS52025.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52025.1 Public Mus musculus 7 Vmn1r86 23 108 98 CCDS HistoryNCBI Gene:100312473Re-query CCDS DB by CCDS ID:52025.1Re-query CCDS DB by GeneID:100312473See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52025.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094828.2 ENSMUSP00000092423.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094828.2Link to Ensembl Protein Viewer:ENSMUSP00000092423.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000094828Re-query CCDS DB by Protein ID:ENSMUSP00000092423
Original member Current member EBI ENSMUST00000226604.1 ENSMUSP00000154276.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226604.1Link to Ensembl Protein Viewer:ENSMUSP00000154276.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226604Re-query CCDS DB by Protein ID:ENSMUSP00000154276
Original member Current member EBI ENSMUST00000227220.1 ENSMUSP00000154549.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227220.1Link to Ensembl Protein Viewer:ENSMUSP00000154549.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227220Re-query CCDS DB by Protein ID:ENSMUSP00000154549
Original member Current member NCBI NM_001167536.1 NP_001161008.1 Accepted alive Link to Nucleotide Sequence:NM_001167536.1Link to Protein Sequence:NP_001161008.1Re-query CCDS DB by Nucleotide ID:NM_001167536Re-query CCDS DB by Protein ID:NP_001161008Link to BLAST:NP_001161008.1

Chromosomal Locations for CCDS 52025.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 13101997 13102947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGCTTCCAAGTGACACCATCTTCCAGATCTTTCTCATATTCCAGTTTTGTCTTGGTGTCATAGGGAACT
CATCACTGTTAATGTTGTATGTATACACTTTCTTCTTCAAGCCTCATTTAAAGAAGTTGATAGATTCAGT
TTTTATGCACCTGACAATAGTTAATATGTCAACAATCATGTTCTCATTGATAAAAGATATCATGTTTTCC
TTTAGAGTACCCAATTTTCTGGATGATATTGGTTGTAAGGCAGTTTTGTTTTCATTCAGAGTCAGCCGGG
GTCTGTCCATCTGCACCACCTCTGTTCTAAGCACGTTCCAAGTCATCACCATCACTCCCAGTAACTCTAA
GTGGGCCTCCTGGCTTAAGCCAAGACTCTCTACATGGATTTTTTCTTCCTTACTTTGCTCCTGGCTGATT
AATCTACTTATCTACGGGTATATGCTTGATTTGGTAATAGCGAAAACAAATAACAGTCACGTTGGCCGTG
GATATTCACATGGTTACTGTCAAAACAAGAAATATGGGAGCCATGATTCAGGATGGTTTTTTAGCCTTAT
CATCACTCATGATCTCATCTATGTGGCTGTCATGATGTGGGCCAGCCTCTACATGGTTATTTTCCTATAC
AGACACCGCAAGACAGCCCAGCATCTCCACAGCCCAAACCTTTCCTCCCAGCCATCTCCTGAGCGCAAAG
CCACTCACAGCATCCTGTTTCTGGTGAGCTGCTTTGTGTTAACTTATTGGTTGAACAACTCCATCACCCT
TTATGGCTTTTATACAAAAGAAAAAATTCCAAGATTGGAGGCAATTGATACAATTTTAACAACAAGCTAC
CCAACCATCTGTCCTTTTTTACTCATGAAGAATAATAAGGTTATTTTGCAATTCACCTCTTCATTTTCTG
TTTTGAGAATGACCAGTTTTCAAAGTTCACTCCATGGCTGA

Translation (316 aa):
MLPSDTIFQIFLIFQFCLGVIGNSSLLMLYVYTFFFKPHLKKLIDSVFMHLTIVNMSTIMFSLIKDIMFS
FRVPNFLDDIGCKAVLFSFRVSRGLSICTTSVLSTFQVITITPSNSKWASWLKPRLSTWIFSSLLCSWLI
NLLIYGYMLDLVIAKTNNSHVGRGYSHGYCQNKKYGSHDSGWFFSLIITHDLIYVAVMMWASLYMVIFLY
RHRKTAQHLHSPNLSSQPSPERKATHSILFLVSCFVLTYWLNNSITLYGFYTKEKIPRLEAIDTILTTSY
PTICPFLLMKNNKVILQFTSSFSVLRMTSFQSSLHG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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