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Report for CCDS61027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61027.1 Public Homo sapiens 12 P3H3 24 110 108 CCDS HistoryNCBI Gene:10536Re-query CCDS DB by CCDS ID:61027.1Re-query CCDS DB by GeneID:10536See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290510.10 ENSP00000478600.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000290510.10Link to Ensembl Protein Viewer:ENSP00000478600.1Re-query CCDS DB by Nucleotide ID:ENST00000290510Re-query CCDS DB by Protein ID:ENSP00000478600
Original member Current member NCBI NM_014262.5 NP_055077.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014262.5Link to Protein Sequence:NP_055077.2Re-query CCDS DB by Nucleotide ID:NM_014262Re-query CCDS DB by Protein ID:NP_055077Link to BLAST:NP_055077.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055077.2 736 Q8IVL6-1 736 100% 0 0

Chromosomal Locations for CCDS 61027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6828441 6828938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6829859 6830011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6830353 6830554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6830639 6830770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6831216 6831352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6831825 6831914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6833592 6833644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6833742 6833809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6833925 6834049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6836985 6837086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6837423 6837573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6837732 6837849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6837958 6838033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6839000 6839140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6839297 6839461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGCTCCGGCTCCTCCGGCCGCTGCTGCTACTGCTGCTGCTGCCTCCCCCGGGGTCCCCTGAGCCCCCCG
GCCTGACCCAGCTGTCCCCGGGGGCGCCCCCGCAGGCCCCCGACTTGCTCTACGCTGACGGGCTGCGCGC
CTACGCGGCCGGGGCTTGGGCGCCGGCCGTGGCGCTGCTGCGGGAGGCGCTGCGGAGCCAGGCGGCGCTG
GGCCGGGTGCGGCTGGATTGCGGGGCGAGCTGCGCGGCCGATCCGGGCGCCGCGCTCCCCGCCGTGCTTC
TCGGGGCCCCGGAGCCCGACTCCGGGCCGGGACCCACGCAGGGGTCCTGGGAGCGACAGCTTCTCCGTGC
AGCGCTCCGCCGCGCAGACTGCCTGACCCAGTGCGCAGCACGGAGGCTGGGCCCCGGGGGCGCGGCGCGG
CTTCGCGTGGGGAGCGCGCTCCGGGACGCCTTCCGCCGTCGGGAGCCCTACAACTACCTGCAGAGGGCCT
ATTACCAGTTGAAGAAGCTGGATCTGGCAGCTGCGGCAGCACACACCTTCTTTGTAGCAAACCCCATGCA
CCTGCAGATGCGGGAGGACATGGCTAAGTACAGACGAATGTCGGGAGTTCGGCCCCAGAGCTTCCGGGAC
CTGGAGACGCCCCCACACTGGGCAGCCTATGACACTGGCCTGGAGCTACTGGGGCGCCAGGAGGCAGGAC
TGGCACTGCCCAGGCTAGAGGAGGCTCTTCAGGGGAGCCTGGCCCAGATGGAGAGCTGCCGTGCTGACTG
TGAGGGGCCTGAGGAGCAGCAGGGGGCTGAAGAAGAGGAGGATGGGGCTGCGAGCCAGGGGGGCCTCTAT
GAGGCCATTGCAGGACACTGGATTCAGGTCCTGCAGTGCCGGCAACGCTGTGTGGGGGAAACAGCCACAC
GCCCTGGTCGCAGCTTCCCTGTCCCAGACTTCCTTCCCAACCAGCTGAGGCGGCTACATGAGGCCCATGC
TCAGGTGGGCAATCTGTCCCAGGCTATAGAAAATGTCCTGAGTGTCCTGCTCTTCTACCCGGAGGATGAG
GCTGCCAAGAGGGCTCTGAACCAGTACCAGGCCCAGCTGGGAGAGCCGAGACCTGGCCTCGGACCCAGAG
AGGACATCCAGCGCTTCATCCTCCGATCCCTGGGGGAGAAGAGGCAGCTCTACTATGCCATGGAGCACCT
GGGGACCAGCTTCAAGGATCCTGACCCCTGGACCCCTGCAGCTCTCATCCCTGAGGCACTTAGAGAAAAG
CTCAGAGAGGATCAAGAGAAGAGGCCTTGGGACCATGAGCCCGTGAAGCCAAAGCCCTTGACCTACTGGA
AGGATGTCCTTCTCCTGGAGGGTGTGACCTTGACCCAGGATTCCAGGCAGCTGAATGGGTCGGAGCGGGC
GGTGTTGGATGGGCTGCTCACCCCAGCCGAGTGTGGGGTGCTGCTGCAGCTGGCTAAGGATGCAGCTGGG
GCTGGAGCCAGGTCTGGCTATCGTGGTCGCCGCTCCCCTCACACCCCCCATGAACGCTTCGAGGGGCTCA
CGGTGCTTAAGGCTGCGCAGCTGGCCCGGGCTGGGACAGTGGGCAGTCAGGGTGCTAAGCTGCTTCTGGA
GGTGAGCGAGCGGGTGCGGACCTTGACCCAGGCCTACTTCTCCCCGGAACGGCCCCTGCATCTGTCCTTC
ACCCACCTGGTGTGCCGCAGCGCCATAGAAGGAGAGCAAGAGCAGCGCATGGACCTGAGTCACCCAGTGC
ACGCAGACAACTGCGTCCTGGACCCTGACACGGGAGAGTGCTGGCGGGAGCCCCCAGCCTACACCTATCG
GGACTACAGCGGACTCCTCTACCTCAACGATGACTTCCAGGGTGGGGACCTGTTCTTCACGGAGCCCAAC
GCCCTCACTGTCACGGCTCGGGTGCGTCCTCGCTGTGGGCGCCTTGTGGCCTTCAGCTCCGGTGTCGAGA
ATCCCCATGGGGTGTGGGCCGTGACTCGGGGACGGCGCTGTGCCCTGGCACTGTGGCACACGTGGGCACC
TGAGCACAGGGAGCAGGAGTGGATAGAAGCCAAAGAACTGCTGCAGGAGTCACAGGAGGAGGAGGAAGAG
GAAGAGGAAGAAATGCCCAGCAAAGACCCTTCCCCAGAGCCCCCTAGCCGCAGGCACCAGAGGGTCCAAG
ACAAGACTGGAAGGGCACCTCGGGTTCGGGAGGAGCTGTGA

Translation (736 aa):
MLRLLRPLLLLLLLPPPGSPEPPGLTQLSPGAPPQAPDLLYADGLRAYAAGAWAPAVALLREALRSQAAL
GRVRLDCGASCAADPGAALPAVLLGAPEPDSGPGPTQGSWERQLLRAALRRADCLTQCAARRLGPGGAAR
LRVGSALRDAFRRREPYNYLQRAYYQLKKLDLAAAAAHTFFVANPMHLQMREDMAKYRRMSGVRPQSFRD
LETPPHWAAYDTGLELLGRQEAGLALPRLEEALQGSLAQMESCRADCEGPEEQQGAEEEEDGAASQGGLY
EAIAGHWIQVLQCRQRCVGETATRPGRSFPVPDFLPNQLRRLHEAHAQVGNLSQAIENVLSVLLFYPEDE
AAKRALNQYQAQLGEPRPGLGPREDIQRFILRSLGEKRQLYYAMEHLGTSFKDPDPWTPAALIPEALREK
LREDQEKRPWDHEPVKPKPLTYWKDVLLLEGVTLTQDSRQLNGSERAVLDGLLTPAECGVLLQLAKDAAG
AGARSGYRGRRSPHTPHERFEGLTVLKAAQLARAGTVGSQGAKLLLEVSERVRTLTQAYFSPERPLHLSF
THLVCRSAIEGEQEQRMDLSHPVHADNCVLDPDTGECWREPPAYTYRDYSGLLYLNDDFQGGDLFFTEPN
ALTVTARVRPRCGRLVAFSSGVENPHGVWAVTRGRRCALALWHTWAPEHREQEWIEAKELLQESQEEEEE
EEEEMPSKDPSPEPPSRRHQRVQDKTGRAPRVREEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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