NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14441.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14441.1 Public Homo sapiens X LPAR4 24 110 108 CCDS HistoryNCBI Gene:2846Re-query CCDS DB by CCDS ID:14441.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14441.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435339.3 ENSP00000408205.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435339.3Link to Ensembl Protein Viewer:ENSP00000408205.2Re-query CCDS DB by Nucleotide ID:ENST00000435339Re-query CCDS DB by Protein ID:ENSP00000408205
Original member Current member EBI ENST00000614823.5 ENSP00000478261.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614823.5Link to Ensembl Protein Viewer:ENSP00000478261.1Re-query CCDS DB by Nucleotide ID:ENST00000614823Re-query CCDS DB by Protein ID:ENSP00000478261
Original member Current member NCBI NM_001278000.3 NP_001264929.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278000.3Link to Protein Sequence:NP_001264929.1Re-query CCDS DB by Nucleotide ID:NM_001278000Re-query CCDS DB by Protein ID:NP_001264929Link to BLAST:NP_001264929.1
Original member Current member NCBI NM_005296.3 NP_005287.1 Accepted alive Link to Nucleotide Sequence:NM_005296.3Link to Protein Sequence:NP_005287.1Re-query CCDS DB by Nucleotide ID:NM_005296Re-query CCDS DB by Protein ID:NP_005287Link to BLAST:NP_005287.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264929.1 370 Q99677 370 100% 0 0
NP_005287.1 370 Q99677 370 100% 0 0

Chromosomal Locations for CCDS 14441.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 78754870 78755982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGGTGACAGAAGATTCATTGACTTCCAATTCCAAGATTCAAATTCAAGCCTCAGACCCAGGTTGGGCA
ATGCTACTGCCAATAATACTTGCATTGTTGATGATTCCTTCAAGTATAATCTCAATGGTGCTGTCTACAG
TGTTGTATTCATCTTGGGTCTGATAACCAACAGTGTCTCTCTGTTTGTCTTCTGTTTCCGCATGAAAATG
AGAAGTGAGACTGCTATTTTTATCACCAATCTAGCTGTCTCTGATTTGCTTTTTGTCTGTACACTACCTT
TTAAAATATTTTACAACTTCAACCGCCACTGGCCTTTTGGTGACACCCTCTGCAAGATCTCTGGAACTGC
ATTCCTTACCAACATCTATGGGAGCATGCTCTTTCTCACCTGTATTAGTGTGGATCGTTTCCTGGCCATT
GTCTATCCTTTTCGATCTCGTACTATTAGGACTAGGAGGAATTCTGCCATTGTGTGTGCTGGTGTCTGGA
TCCTAGTCCTCAGTGGCGGTATTTCAGCCTCTTTGTTTTCCACCACTAATGTCAACAATGCAACCACCAC
CTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGACTTATTTATCCAAGATCACAATATTTATTGAAGTT
GTTGGGTTTATCATTCCTCTAATATTGAATGTCTCTTGCTCTTCTGTGGTGCTGAGAACTCTTCGCAAGC
CTGCTACTCTGTCTCAAATTGGGACCAATAAGAAAAAAGTACTGAAAATGATCACAGTACATATGGCAGT
CTTTGTGGTATGCTTTGTACCCTACAACTCTGTCCTCTTCTTGTATGCCCTGGTGCGCTCCCAAGCTATT
ACTAATTGCTTTTTGGAAAGATTTGCAAAGATCATGTACCCAATCACCTTGTGCCTTGCAACTCTGAACT
GTTGTTTTGACCCTTTCATCTATTACTTCACCCTTGAATCCTTTCAGAAGTCCTTCTACATCAATGCCCA
CATCAGAATGGAGTCCCTGTTTAAGACTGAAACACCTTTGACCACAAAGCCTTCCCTTCCAGCTATTCAA
GAGGAAGTGAGTGATCAAACAACAAATAATGGTGGTGAATTAATGCTAGAATCCACCTTTTAG

Translation (370 aa):
MGDRRFIDFQFQDSNSSLRPRLGNATANNTCIVDDSFKYNLNGAVYSVVFILGLITNSVSLFVFCFRMKM
RSETAIFITNLAVSDLLFVCTLPFKIFYNFNRHWPFGDTLCKISGTAFLTNIYGSMLFLTCISVDRFLAI
VYPFRSRTIRTRRNSAIVCAGVWILVLSGGISASLFSTTNVNNATTTCFEGFSKRVWKTYLSKITIFIEV
VGFIIPLILNVSCSSVVLRTLRKPATLSQIGTNKKKVLKMITVHMAVFVVCFVPYNSVLFLYALVRSQAI
TNCFLERFAKIMYPITLCLATLNCCFDPFIYYFTLESFQKSFYINAHIRMESLFKTETPLTTKPSLPAIQ
EEVSDQTTNNGGELMLESTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH