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Report for CCDS12969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12969.1 Public Homo sapiens 19 ZSCAN1 24 110 108 CCDS HistoryNCBI Gene:284312Re-query CCDS DB by CCDS ID:12969.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282326.6 ENSP00000282326.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282326.6Link to Ensembl Protein Viewer:ENSP00000282326.1Re-query CCDS DB by Nucleotide ID:ENST00000282326Re-query CCDS DB by Protein ID:ENSP00000282326
Original member Current member NCBI NM_182572.4 NP_872378.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182572.4Link to Protein Sequence:NP_872378.3Re-query CCDS DB by Nucleotide ID:NM_182572Re-query CCDS DB by Protein ID:NP_872378Link to BLAST:NP_872378.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872378.3 408 Q8NBB4-1 408 100% 0 0

Chromosomal Locations for CCDS 12969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 58037837 58038206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58040450 58040544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58052490 58052628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 58053429 58054051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGCTTCCACGGCCCAAAGCCCCTGCCTCCCCCAGACGCCCCCAGACCCCAACCCCGAGTGAGCAGGACG
CAGACCCTGGGCCAGCAAGCCCCAGGGACACCGAAGCCCAGCGTCTGCGCTTCCGGCAGTTCCAGTACCA
CGTGGCGAGCGGGCCGCACCTCGCGCTGGGCCAGCTCTGGACGCTGTGCCGCCAGTGGCTGAGGCCCGAG
GCGCGCTCCAAGGAGCAGATGCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGGGCGCGCTGCCCAGCAAGA
TGCGGACCTGGGTGCAGTCACAGGGCCCCCGAAGCTGCAGGGAGGCCGCCAGCCTGGTGGAGGACCTCAC
ACAGATGTGCCAGCAGGAAGTTCTGGTATCTCTGGACTCGGTCGAACCCCAGGACTGGAGTTTCGGTGAG
GAGGAAGATGGGAAGAGTCCAAGGTCCCAGAAAGAACCATCGCAGGCGTCTGAGCTGATTCTGGATGCAG
TGGCAGCAGCCCCAGCACTCCCCGAGGAAAGTGAGTGGCTGGAGACTACCCAGCTCCAGCAGAGTCTGCA
CACCAGGGCGGAGGCCGAAGCGCCCCGCGCCCCTGGCTTGCTGGGGTCCCGGGCCCGCTTGCCTCTGAAG
CCGAGTATCTGGGACGAGCCTGAGGACCTTCTCGCAGGGCCCTCCTCAGACCTGCGGGCAGAAGGGACTG
TGATCTCGAGCCCCAAGGGTCCAAGTGCTCAGAGAATCAGTCCCCGAAGGAGAAACAGGAACACTGACCA
GAGCGGCCGCCACCAGCCATCCCTCAAGCACACCAAAGGTGGTACCCAAGAGGCTGTTGCAGGCATCTCG
GTAGTGCCGCGTGGGCCCCGAGGTGGGCGGCCCTTCCAGTGTGCCGACTGTGGGATGGTCTTCACCTGGG
TCACCCACTTCATCGAGCACCAGAAGACCCATCGCGAGGAAGGGCCCTTTCCGTGCCCCGAGTGTGGCAA
GGTCTTCCTGCACAACTCCGTCCTCACTGAGCATGGCAAGATCCACCTGCTGGAGCCACCGAGGAAGAAA
GCCCCCCGGAGCAAGGGCCCCCGGGAGTCCGTCCCACCCAGGGATGGAGCCCAGGGCCCAGTGGCCCCTC
GCAGCCCCAAAAGACCCTTCCAGTGTAGCGTCTGCGGGAAGGCCTTCCCCTGGATGGTCCACCTCATTGA
CCACCAGAAGCTCCACACGGCCCACGGCCACATGTGA

Translation (408 aa):
MLPRPKAPASPRRPQTPTPSEQDADPGPASPRDTEAQRLRFRQFQYHVASGPHLALGQLWTLCRQWLRPE
ARSKEQMLELLVLEQFLGALPSKMRTWVQSQGPRSCREAASLVEDLTQMCQQEVLVSLDSVEPQDWSFGE
EEDGKSPRSQKEPSQASELILDAVAAAPALPEESEWLETTQLQQSLHTRAEAEAPRAPGLLGSRARLPLK
PSIWDEPEDLLAGPSSDLRAEGTVISSPKGPSAQRISPRRRNRNTDQSGRHQPSLKHTKGGTQEAVAGIS
VVPRGPRGGRPFQCADCGMVFTWVTHFIEHQKTHREEGPFPCPECGKVFLHNSVLTEHGKIHLLEPPRKK
APRSKGPRESVPPRDGAQGPVAPRSPKRPFQCSVCGKAFPWMVHLIDHQKLHTAHGHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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