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Report for CCDS42675.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42675.1 Public Homo sapiens 2 PREPL 24 110 108 CCDS HistoryNCBI Gene:9581Re-query CCDS DB by CCDS ID:42675.1Re-query CCDS DB by GeneID:9581See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42675.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378511.7 ENSP00000367772.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378511.7Link to Ensembl Protein Viewer:ENSP00000367772.3Re-query CCDS DB by Nucleotide ID:ENST00000378511Re-query CCDS DB by Protein ID:ENSP00000367772
Original member Current member NCBI NM_001042385.2 NP_001035844.1 Accepted alive Link to Nucleotide Sequence:NM_001042385.2Link to Protein Sequence:NP_001035844.1Re-query CCDS DB by Nucleotide ID:NM_001042385Re-query CCDS DB by Protein ID:NP_001035844Link to BLAST:NP_001035844.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035844.1 665 Q4J6C6-3 665 100% 0 0

Chromosomal Locations for CCDS 42675.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 44321356 44321445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44321827 44321900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44322731 44322854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44323262 44323411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44326712 44326928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44328937 44329112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44332459 44332656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44339147 44339363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44342417 44342552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44343745 44343951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44344520 44344586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44346268 44346390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 44359497 44359715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGCAGCAGAAGACCAAATTATTTCTCCAAGCTTTGAAGTATAGTATTCCTCACCTTGGAAAATGCATGC
AGAAACAGCATTTGAATCACTATAACTTCGCTGATCATTGTTACAATAGAATAAAATTGAAAAAATATCA
CCTAACCAAGTGTCTTCAGAATAAACCCAAGATATCAGAGTTAGCAAGAAACATCCCAAGTCGGAGCTTC
TCATGTAAGGATCTTCAGCCTGTTAAACAAGAAAACGAAAAACCCCTTCCAGAAAACATGGATGCATTTG
AAAAAGTGAGAACAAAATTAGAAACACAGCCACAAGAAGAATATGAAATCATCAATGTGGAAGTTAAACA
TGGTGGTTTTGTTTATTACCAAGAAGGTTGTTGCTTGGTTCGTTCCAAAGATGAAGAAGCAGACAATGAT
AATTATGAAGTTTTATTCAATTTGGAGGAACTTAAGTTAGACCAGCCCTTCATTGATTGTATCAGAGTTG
CTCCAGATGAAAAATATGTGGCTGCCAAGATAAGAACTGAAGATTCTGAAGCATCTACCTGTGTAATTAT
AAAGCTCAGCGATCAGCCCGTAATGGAAGCTTCTTTCCCGAATGTGTCCAGTTTTGAATGGGTAAAGGAC
GAGGAAGATGAAGATGTTTTATTCTACACCTTCCAGAGGAACCTTCGCTGTCATGACGTATATCGAGCCA
CTTTTGGTGATAACAAACGTAATGAACGCTTTTACACAGAAAAAGACCCAAGCTACTTTGTTTTCCTTTA
TCTTACAAAAGACAGTCGTTTCCTCACCATAAATATTATGAACAAGACTACTTCTGAAGTGTGGTTGATA
GATGGCCTGAGCCCTTGGGACCCACCAGTACTTATCCAGAAGCGAATACATGGGGTCCTTTACTATGTTG
AACACAGAGATGATGAATTATACATTCTCACTAATGTTGGAGAACCTACAGAATTTAAGCTCCCTCCTTG
GGCCTGTGGATTCATAATGGATACAAATTCTGACCCAAAGAACTGCCCCTTTCAACTTTGCTCTCCAATA
CGTCCCCCAAAATATTACACATACAAGTTTGCAGAAGGCAAACTGTTTGAGGAAACTGGGCATGAAGACC
CAATCACAAAGACTAGTCGCGTTTTACGTCTAGAAGCCAAAAGCAAGGATGGAAAATTAGTGCCAATGAC
TGTTTTCCACAAAACTGACTCTGAGGACTTGCAGAAGAAACCTCTCTTGGTACATGTATATGGAGCTTAT
GGAATGGATTTGAAAATGAATTTCAGGCCTGAGAGGCGGGTCCTGGTGGATGATGGATGGATATTAGCAT
ACTGCCATGTTCGAGGTGGTGGTGAGTTAGGCCTCCAGTGGCACGCTGATGGCCGCCTAACTAAAAAACT
CAATGGCCTTGCTGATTTAGAGGCTTGCATTAAGACGCTTCATGGCCAAGGCTTTTCTCAGCCAAGTCTA
ACAACCCTGACTGCTTTCAGTGCTGGAGGGGTGCTTGCAGGAGCATTGTGTAATTCTAATCCAGAGCTGG
TGAGAGCGGTGACTTTGGAGGCACCTTTCTTGGATGTTCTCAACACCATGATGGACACTACACTTCCTCT
GACATTAGAAGAATTAGAAGAATGGGGGAATCCTTCATCTGATGAAAAACACAAGAACTACATAAAACGT
TACTGTCCCTATCAAAATATTAAACCTCAGCATTATCCTTCAATTCACATAACGGCATATGAAAACGATG
AACGGGTACCTCTGAAAGGAATTGTAAGTTATACTGAGAAACTCAAGGAAGCCATCGCGGAGCATGCTAA
GGACACAGGTGAAGGCTATCAGACCCCTAATATTATTCTAGATATTCAGCCTGGAGGCAATCATGTAATT
GAGGATTCTCACAAAAAGATTACAGCCCAAATTAAATTCCTGTACGAGGAACTTGGACTTGACAGCACCA
GTGTTTTCGAGGATCTTAAGAAATACCTGAAATTCTGA

Translation (665 aa):
MQQKTKLFLQALKYSIPHLGKCMQKQHLNHYNFADHCYNRIKLKKYHLTKCLQNKPKISELARNIPSRSF
SCKDLQPVKQENEKPLPENMDAFEKVRTKLETQPQEEYEIINVEVKHGGFVYYQEGCCLVRSKDEEADND
NYEVLFNLEELKLDQPFIDCIRVAPDEKYVAAKIRTEDSEASTCVIIKLSDQPVMEASFPNVSSFEWVKD
EEDEDVLFYTFQRNLRCHDVYRATFGDNKRNERFYTEKDPSYFVFLYLTKDSRFLTINIMNKTTSEVWLI
DGLSPWDPPVLIQKRIHGVLYYVEHRDDELYILTNVGEPTEFKLPPWACGFIMDTNSDPKNCPFQLCSPI
RPPKYYTYKFAEGKLFEETGHEDPITKTSRVLRLEAKSKDGKLVPMTVFHKTDSEDLQKKPLLVHVYGAY
GMDLKMNFRPERRVLVDDGWILAYCHVRGGGELGLQWHADGRLTKKLNGLADLEACIKTLHGQGFSQPSL
TTLTAFSAGGVLAGALCNSNPELVRAVTLEAPFLDVLNTMMDTTLPLTLEELEEWGNPSSDEKHKNYIKR
YCPYQNIKPQHYPSIHITAYENDERVPLKGIVSYTEKLKEAIAEHAKDTGEGYQTPNIILDIQPGGNHVI
EDSHKKITAQIKFLYEELGLDSTSVFEDLKKYLKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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