NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS31375.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31375.2 Public Homo sapiens 11 OR51V1 24 110 108 CCDS HistoryNCBI Gene:283111Re-query CCDS DB by CCDS ID:31375.2See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 31375.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641270.1 ENSP00000492968.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641270.1Link to Ensembl Protein Viewer:ENSP00000492968.1Re-query CCDS DB by Nucleotide ID:ENST00000641270Re-query CCDS DB by Protein ID:ENSP00000492968
Original member Current member NCBI NM_001004760.3 NP_001004760.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001004760.3Link to Protein Sequence:NP_001004760.3Re-query CCDS DB by Nucleotide ID:NM_001004760Re-query CCDS DB by Protein ID:NP_001004760Link to BLAST:NP_001004760.3

Chromosomal Locations for CCDS 31375.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 5199735 5200682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGATTACTTCAGTAAGCCCTAGCACCAGCACGAATTCTTCCTTTCTTCTCACTGGATTTTCTGGCATGG
AGCAGCAATACCCCTGGCTTTCCATCCCCTTCTCCTCAATCTATGCCATGGTGCTTTTGGGCAATTGCAT
GGTTCTCCATGTGATATGGACTGAGCCAAGCCTGCACCAGCCTATGTTTTACTTCCTGTCCATGCTGGCC
CTCACTGACCTGTGCATGGGGCTGTCCACTGTGTACACAGTGCTGGGGATCCTGTGGGGGATCATTCGAG
AGATCAGCTTGGATTCCTGCATTGCCCAGTCCTATTTCATCCATGGTCTGTCCTTCATGGAGTCCTCTGT
CCTCCTCACTATGGCCTTTGACCGGTACATTGCAATTTGCAATCCACTACGTTATTCCTCCATCCTGACT
AATTCCAGAATTATCAAAATTGGGCTCACTATAATAGGTAGGAGTTTTTTCTTTATTACACCCCCCATCA
TCTGTCTGAAATTTTTTAATTACTGTCATTTCCACATCCTTTCTCACTCTTTCTGCCTGCACCAGGATCT
TCTCCGCTTAGCCTGTTCAGACATCCGATTCAATAGTTACTATGCCCTGATGCTGGTTATTTGCATACTG
TTGTTGGATGCTATACTCATCCTTTTCTCCTACATCCTGATTCTTAAGTCAGTCCTGGCAGTTGCCTCTC
AGGAAGAGAGGCATAAATTATTTCAGACCTGCATCTCCCACATCTGTGCTGTCCTTGTGTTCTACATCCC
TATCATTAGCCTCACAATGGTGCACCGTTTTGGCAAGCACCTTTCCCCCGTGGCCCACGTTCTCATTGGC
AACATCTACATCCTTTTCCCACCTTTAATGAATCCCATCATCTACAGTGTCAAGACCCAACAGATTCATA
CCAGAATGCTTAGACTCTTTTCTCTGAAAAGATATTGA

Translation (315 aa):
MITSVSPSTSTNSSFLLTGFSGMEQQYPWLSIPFSSIYAMVLLGNCMVLHVIWTEPSLHQPMFYFLSMLA
LTDLCMGLSTVYTVLGILWGIIREISLDSCIAQSYFIHGLSFMESSVLLTMAFDRYIAICNPLRYSSILT
NSRIIKIGLTIIGRSFFFITPPIICLKFFNYCHFHILSHSFCLHQDLLRLACSDIRFNSYYALMLVICIL
LLDAILILFSYILILKSVLAVASQEERHKLFQTCISHICAVLVFYIPIISLTMVHRFGKHLSPVAHVLIG
NIYILFPPLMNPIIYSVKTQQIHTRMLRLFSLKRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH