NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS54351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54351.1 Public Homo sapiens 2 RMDN2 24 110 108 CCDS HistoryNCBI Gene:151393Re-query CCDS DB by CCDS ID:54351.1Re-query CCDS DB by GeneID:151393See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54351.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354545.8 ENSP00000346549.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354545.8Link to Ensembl Protein Viewer:ENSP00000346549.3Re-query CCDS DB by Nucleotide ID:ENST00000354545Re-query CCDS DB by Protein ID:ENSP00000346549
Original member Current member EBI ENST00000406384.5 ENSP00000386004.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000406384.5Link to Ensembl Protein Viewer:ENSP00000386004.1Re-query CCDS DB by Nucleotide ID:ENST00000406384Re-query CCDS DB by Protein ID:ENSP00000386004
Original member Current member NCBI NM_001170791.3 NP_001164262.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001170791.3Link to Protein Sequence:NP_001164262.1Re-query CCDS DB by Nucleotide ID:NM_001170791Re-query CCDS DB by Protein ID:NP_001164262Link to BLAST:NP_001164262.1
Original member Current member NCBI NM_001170792.3 NP_001164263.1 Accepted alive Link to Nucleotide Sequence:NM_001170792.3Link to Protein Sequence:NP_001164263.1Re-query CCDS DB by Nucleotide ID:NM_001170792Re-query CCDS DB by Protein ID:NP_001164263Link to BLAST:NP_001164263.1
Original member Current member NCBI NM_001322211.2 NP_001309140.1 Accepted alive Link to Nucleotide Sequence:NM_001322211.2Link to Protein Sequence:NP_001309140.1Re-query CCDS DB by Nucleotide ID:NM_001322211Re-query CCDS DB by Protein ID:NP_001309140Link to BLAST:NP_001309140.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164262.1 410 Q96LZ7-1 410 100% 0 0
NP_001164263.1 410 Q96LZ7-1 410 100% 0 0
NP_001309140.1 410 Q96LZ7-1 410 100% 0 0

Chromosomal Locations for CCDS 54351.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37929278 37929729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37974040 37974214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37975212 37975314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37981283 37981343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37989541 37989616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37991220 37991297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37997416 37997514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38003991 38004044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38004136 38004216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38017186 38017239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGCCTTATTCCACAAACAAAGAGTTGATACTTGGCATCATGGTGGGCACTGCTGGAATCAGCTTGCTGC
TCTTGTGGTACCACAAGGTCCGTAAACCAGGGATAGCAATGAAGTTACCTGAATTTCTTTCTCTGGGTAA
TACATTTAATTCAATAACTTTGCAAGATGAAATACATGATGACCAAGGAACAACAGTAATCTTTCAAGAA
AGGCAACTTCAGATACTGGAGAAGTTAAACGAATTACTGACAAATATGGAAGAACTCAAAGAGGAAATCA
GATTTCTTAAAGAAGCTATTCCAAAGCTGGAGGAATATATACAAGATGAACTTGGAGGGAAAATAACTGT
TCATAAGATAAGCCCTCAGCACAGAGCGAGAAAAAGAAGACTCCCCACAATTCAAAGTTCAGCAACAAGT
AATAGTTCAGAGGAAGCAGAAAGTGAAGGAGGGTATATTACAGCTAATACTGACACAGAAGAACAGAGTT
TTCCAGTCCCTAAGGCATTTAACACACGTGTAGAGGAATTAAATTTAGATGTCCTTCTTCAGAAGGTAGA
TCATTTACGTATGAGTGAGTCTGGCAAGTCGGAGAGTTTTGAACTACTTCGTGACCACAAAGAAAAGTTT
AGAGATGAAATAGAGTTTATGTGGCGATTTGCTCGTGCTTATGGAGACATGTATGAACTATCTACAAACA
CACAAGAAAAGAAACATTATGCTAATATTGGAAAAACTTTAAGTGAAAGAGCTATTAATAGAGCACCCAT
GAATGGACATTGTCATCTGTGGTATGCAGTTTTGTGTGGCTATGTATCTGAGTTTGAGGGTTTACAAAAC
AAAATCAACTATGGGCACCTCTTCAAGGAACATCTAGATATAGCAATCAAACTTTTACCAGAGGAACCCT
TTCTATATTACCTCAAAGGGAGATACTGCTATACTGTCTCAAAACTGAGCTGGATTGAGAAAAAAATGGC
TGCTACTCTGTTTGGAAAAATACCATCTTCAACTGTACAAGAAGCTTTACACAATTTCCTTAAGGCTGAA
GAACTATGCCCTGGTTATTCTAATCCCAATTACATGTACTTAGCAAAGTGTTATACTGATCTTGAGGAAA
ACCAGAATGCTTTGAAGTTCTGTAATTTGGCTTTATTGCTTCCTACTGTTACCAAAGAGGATAAAGAGGC
ACAGAAAGAGATGCAAAAAATAATGACTTCCTTGAAGAGGTAA

Translation (410 aa):
MPYSTNKELILGIMVGTAGISLLLLWYHKVRKPGIAMKLPEFLSLGNTFNSITLQDEIHDDQGTTVIFQE
RQLQILEKLNELLTNMEELKEEIRFLKEAIPKLEEYIQDELGGKITVHKISPQHRARKRRLPTIQSSATS
NSSEEAESEGGYITANTDTEEQSFPVPKAFNTRVEELNLDVLLQKVDHLRMSESGKSESFELLRDHKEKF
RDEIEFMWRFARAYGDMYELSTNTQEKKHYANIGKTLSERAINRAPMNGHCHLWYAVLCGYVSEFEGLQN
KINYGHLFKEHLDIAIKLLPEEPFLYYLKGRYCYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAE
ELCPGYSNPNYMYLAKCYTDLEENQNALKFCNLALLLPTVTKEDKEAQKEMQKIMTSLKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH