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Report for CCDS54066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54066.1 Public Homo sapiens 17 SPATA22 24 110 108 CCDS HistoryNCBI Gene:84690Re-query CCDS DB by CCDS ID:54066.1Re-query CCDS DB by GeneID:84690See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54066.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355380.8 ENSP00000347541.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355380.8Link to Ensembl Protein Viewer:ENSP00000347541.4Re-query CCDS DB by Nucleotide ID:ENST00000355380Re-query CCDS DB by Protein ID:ENSP00000347541
Original member Current member NCBI NM_001170696.2 NP_001164167.1 Accepted alive Link to Nucleotide Sequence:NM_001170696.2Link to Protein Sequence:NP_001164167.1Re-query CCDS DB by Nucleotide ID:NM_001170696Re-query CCDS DB by Protein ID:NP_001164167Link to BLAST:NP_001164167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164167.1 320 Q8NHS9-2 320 100% 0 0

Chromosomal Locations for CCDS 54066.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 3440147 3440338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3443174 3443271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3446472 3446601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3448807 3449149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3462483 3462578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3462707 3462767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3469283 3469325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGAAGCGAAGCCTAAATGAAAATTCAGCTCGAAGTACAGCAGATTGGGCCTGGGAAGCTGTGAATCCAG
AGTTGGCTCCTGTAATGAAAACAGTGGACACCGGGCAAATACCACATTCAGTTTCTCGTCCTCTGAGAAG
TCAAGATTCTGTCTTTAACTCTATTCAATCAAATACTGGAAGAAGCCAGGGTGGTTGGAGCTACAGAGAT
GGTAACAAAAATACCAGCTTGAAAACTTGGAATAAAAATGATTTTAAGCCTCAATGTAAACGAACAAACT
TAGTGGCAAATGATGGAAAAAATTCTTGTCCAGTGAGTTCGGGAGCTCAACAACAAAAACAATTAAGAAT
ACCTGAACCTCCTAACTTATCTCGCAACAAAGAAACCGAGCTACTCAGACAAACACATTCATCAAAAATA
TCTGGCTGCACAATGAGAGGGCTAGACAAAAACAGTGCACTACAGACACTTAAGCCCAATTTTCAACAAA
ATCAATATAAGAAACAAATGTTGGATGATATTCCAGAAGACAACACCCTGAAGGAAACCTCATTGTATCA
GTTACAGTTTAAGGAAAAAGCTAGTTCTTTAAGAATTATTTCTGCAGTTATTGAAAGCATGAAGTATTGG
CGTGAACATGCACAGAAAACTGTACTTCTTTTTGAAGTATTAGCTGTTCTTGATTCAGCTGTTACACCTG
GCCCATATTATTCGAAGACTTTTCTTATGAGGGATGGGAAAAATACTCTGCCTTGTGTCTTTTATGAAAT
CGATCGTGAACTTCCGAGACTGATTAGAGGCCGAGTTCATAGATGTGTTGGCAACTATGACCAGAAAAAG
AACATTTTCCAATGTGTTTCTGTCAGACCGGCGTCTGTTTCTGAACAAAAAACTTTCCAGGCATTTGTCA
AAATTGCAGATGTTGAGATGCAGTATTATATTAATGTGATGAATGAAACTTAA

Translation (320 aa):
MKRSLNENSARSTADWAWEAVNPELAPVMKTVDTGQIPHSVSRPLRSQDSVFNSIQSNTGRSQGGWSYRD
GNKNTSLKTWNKNDFKPQCKRTNLVANDGKNSCPVSSGAQQQKQLRIPEPPNLSRNKETELLRQTHSSKI
SGCTMRGLDKNSALQTLKPNFQQNQYKKQMLDDIPEDNTLKETSLYQLQFKEKASSLRIISAVIESMKYW
REHAQKTVLLFEVLAVLDSAVTPGPYYSKTFLMRDGKNTLPCVFYEIDRELPRLIRGRVHRCVGNYDQKK
NIFQCVSVRPASVSEQKTFQAFVKIADVEMQYYINVMNET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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