NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2202.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2202.1 Public Homo sapiens 2 GPD2 24 110 108 CCDS HistoryNCBI Gene:2820Re-query CCDS DB by CCDS ID:2202.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2202.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000310454.10 ENSP00000308610.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000310454.10Link to Ensembl Protein Viewer:ENSP00000308610.5Re-query CCDS DB by Nucleotide ID:ENST00000310454Re-query CCDS DB by Protein ID:ENSP00000308610
Original member Current member EBI ENST00000409674.5 ENSP00000386425.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409674.5Link to Ensembl Protein Viewer:ENSP00000386425.1Re-query CCDS DB by Nucleotide ID:ENST00000409674Re-query CCDS DB by Protein ID:ENSP00000386425
Original member Current member EBI ENST00000438166.7 ENSP00000409708.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438166.7Link to Ensembl Protein Viewer:ENSP00000409708.2Re-query CCDS DB by Nucleotide ID:ENST00000438166Re-query CCDS DB by Protein ID:ENSP00000409708
Original member Current member NCBI NM_000408.5 NP_000399.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000408.5Link to Protein Sequence:NP_000399.3Re-query CCDS DB by Nucleotide ID:NM_000408Re-query CCDS DB by Protein ID:NP_000399Link to BLAST:NP_000399.3
Original member Current member NCBI NM_001083112.3 NP_001076581.2 Accepted alive Link to Nucleotide Sequence:NM_001083112.3Link to Protein Sequence:NP_001076581.2Re-query CCDS DB by Nucleotide ID:NM_001083112Re-query CCDS DB by Protein ID:NP_001076581Link to BLAST:NP_001076581.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000399.3 727 P43304-1 727 100% 0 0
NP_001076581.2 727 P43304-1 727 100% 0 0

Chromosomal Locations for CCDS 2202.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 156476106 156476207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156496044 156496215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156510796 156510920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156512220 156512317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156513333 156513496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156549608 156549772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156550602 156550746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156557389 156557582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156568825 156568959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156569363 156569538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156570087 156570218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156571134 156571292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156578889 156579001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156579086 156579164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156579690 156579788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 156582793 156582918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGCATTTCAAAAGGCAGTGAAAGGGACGATTCTTGTTGGAGGAGGTGCTCTTGCAACTGTTTTAGGAC
TTTCTCAGTTTGCTCATTACAGAAGGAAACAAATGAACCTGGCCTATGTTAAAGCAGCAGACTGCATTTC
AGAACCAGTTAACAGGGAGCCTCCTTCCAGAGAAGCTCAGCTACTGACTTTGCAAAACACATCTGAATTT
GATATCCTTGTTATTGGAGGAGGAGCAACAGGAAGTGGCTGTGCGCTAGATGCTGTCACCAGAGGACTAA
AAACAGCCCTTGTAGAAAGAGATGATTTCTCATCAGGGACCAGCAGCAGAAGCACTAAATTGATCCATGG
TGGTGTGAGATATCTGCAGAAGGCCATCATGAAGTTGGATATTGAGCAGTATAGGATGGTAAAAGAAGCC
CTTCATGAGCGTGCCAACCTGCTAGAAATTGCTCCCCATTTATCAGCTCCATTGCCTATAATGCTTCCAG
TTTACAAGTGGTGGCAGTTACCTTACTACTGGGTAGGAATCAAGCTGTATGATTTGGTTGCAGGAAGCAA
TTGCCTAAAAAGCAGTTATGTCCTCAGCAAATCAAGAGCCCTTGAACATTTCCCAATGCTCCAGAAGGAC
AAACTGGTAGGAGCAATTGTCTACTATGACGGACAACATAACGATGCACGGATGAACCTTGCCATTGCTC
TGACTGCTGCCAGGTATGGGGCTGCCACAGCCAATTACATGGAGGTAGTGAGCTTGCTCAAGAAGACAGA
CCCCCAGACAGGGAAAGTGCGTGTGAGCGGCGCACGGTGCAAGGATGTCCTCACAGGGCAGGAATTTGAC
GTGAGAGCCAAATGTGTTATCAATGCCACGGGACCTTTCACGGACTCTGTGCGCAAAATGGATGATAAAG
ACGCAGCAGCTATCTGCCAGCCAAGTGCTGGTGTCCATATTGTGATGCCTGGTTATTACAGCCCAGAGAG
CATGGGACTTCTTGACCCAGCGACCAGTGATGGGCGAGTTATTTTCTTCTTACCCTGGCAAAAGATGACG
ATCGCTGGCACTACTGATACTCCAACTGATGTTACACACCATCCAATTCCTTCAGAAGAAGATATCAACT
TCATTTTGAATGAAGTGCGTAATTACCTGAGTTGTGATGTTGAAGTGAGAAGAGGGGATGTCCTGGCAGC
ATGGAGTGGAATCCGTCCTCTTGTTACAGACCCCAAATCTGCAGATACTCAGTCTATCTCCCGAAATCAT
GTTGTTGATATCAGTGAGAGTGGCCTTATTACTATAGCAGGTGGAAAGTGGACAACTTATCGGTCTATGG
CAGAAGATACCATAAATGCTGCTGTCAAAACTCATAATTTAAAAGCAGGACCAAGTAGAACAGTTGGGCT
TTTCCTTCAAGGGGGTAAAGATTGGAGCCCCACACTCTACATTAGGCTTGTGCAGGATTATGGACTTGAA
AGCGAGGTGGCACAGCATCTTGCCGCCACCTATGGTGATAAGGCCTTTGAGGTGGCCAAAATGGCAAGTG
TGACTGGCAAAAGGTGGCCTATTGTTGGAGTACGTCTTGTGTCAGAATTTCCATATATTGAAGCAGAGGT
GAAATATGGGATTAAGGAGTATGCCTGCACTGCTGTGGATATGATTTCACGTCGTACTCGCCTGGCCTTT
CTAAATGTCCAGGCAGCAGAGGAAGCCCTACCCAGGATTGTTGAACTGATGGGCAGGGAACTGAATTGGG
ATGATTATAAGAAGCAGGAACAACTTGAAACAGCCAGGAAGTTTCTATATTATGAAATGGGCTATAAATC
TCGATCAGAACAGTTAACAGATCGCTCTGAAATTAGCCTACTGCCTTCAGACATTGACAGGTATAAGAAG
AGATTTCATAAGTTTGATGCAGACCAGAAAGGCTTTATTACCATTGTTGATGTTCAGCGTGTATTAGAGA
GTATCAATGTCCAAATGGATGAAAATACACTCCATGAAATTCTAAATGAAGTTGATTTGAATAAAAATGG
ACAGGTTGAACTCAATGAATTTTTGCAGCTGATGAGTGCTATTCAAAAAGGAAGGGTATCTGGAAGCCGG
CTTGCTATACTAATGAAAACTGCAGAAGAGAACCTCGACAGAAGAGTTCCAATTCCAGTGGACCGTAGTT
GTGGAGGATTGTGA

Translation (727 aa):
MAFQKAVKGTILVGGGALATVLGLSQFAHYRRKQMNLAYVKAADCISEPVNREPPSREAQLLTLQNTSEF
DILVIGGGATGSGCALDAVTRGLKTALVERDDFSSGTSSRSTKLIHGGVRYLQKAIMKLDIEQYRMVKEA
LHERANLLEIAPHLSAPLPIMLPVYKWWQLPYYWVGIKLYDLVAGSNCLKSSYVLSKSRALEHFPMLQKD
KLVGAIVYYDGQHNDARMNLAIALTAARYGAATANYMEVVSLLKKTDPQTGKVRVSGARCKDVLTGQEFD
VRAKCVINATGPFTDSVRKMDDKDAAAICQPSAGVHIVMPGYYSPESMGLLDPATSDGRVIFFLPWQKMT
IAGTTDTPTDVTHHPIPSEEDINFILNEVRNYLSCDVEVRRGDVLAAWSGIRPLVTDPKSADTQSISRNH
VVDISESGLITIAGGKWTTYRSMAEDTINAAVKTHNLKAGPSRTVGLFLQGGKDWSPTLYIRLVQDYGLE
SEVAQHLAATYGDKAFEVAKMASVTGKRWPIVGVRLVSEFPYIEAEVKYGIKEYACTAVDMISRRTRLAF
LNVQAAEEALPRIVELMGRELNWDDYKKQEQLETARKFLYYEMGYKSRSEQLTDRSEISLLPSDIDRYKK
RFHKFDADQKGFITIVDVQRVLESINVQMDENTLHEILNEVDLNKNGQVELNEFLQLMSAIQKGRVSGSR
LAILMKTAEENLDRRVPIPVDRSCGGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH