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Report for CCDS23963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23963.1 Public Mus musculus 10 Agpat3 23 108 98 CCDS HistoryNCBI Gene:28169Re-query CCDS DB by CCDS ID:23963.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001240.11 ENSMUSP00000001240.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001240.11Link to Ensembl Protein Viewer:ENSMUSP00000001240.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001240Re-query CCDS DB by Protein ID:ENSMUSP00000001240
Original member Current member EBI ENSMUST00000105387.7 ENSMUSP00000101026.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105387.7Link to Ensembl Protein Viewer:ENSMUSP00000101026.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105387Re-query CCDS DB by Protein ID:ENSMUSP00000101026
Original member Current member EBI ENSMUST00000105388.7 ENSMUSP00000101027.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105388.7Link to Ensembl Protein Viewer:ENSMUSP00000101027.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105388Re-query CCDS DB by Protein ID:ENSMUSP00000101027
Original member Current member EBI ENSMUST00000105389.7 ENSMUSP00000101028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105389.7Link to Ensembl Protein Viewer:ENSMUSP00000101028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105389Re-query CCDS DB by Protein ID:ENSMUSP00000101028
Original member Current member EBI ENSMUST00000105390.7 ENSMUSP00000101029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105390.7Link to Ensembl Protein Viewer:ENSMUSP00000101029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105390Re-query CCDS DB by Protein ID:ENSMUSP00000101029
Original member Current member EBI ENSMUST00000166360.7 ENSMUSP00000132954.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166360.7Link to Ensembl Protein Viewer:ENSMUSP00000132954.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166360Re-query CCDS DB by Protein ID:ENSMUSP00000132954
Original member NCBI NM_053014.3 NP_443747.2 Updated not alive Link to Nucleotide Sequence:NM_053014.3Link to Protein Sequence:NP_443747.2Re-query CCDS DB by Nucleotide ID:NM_053014Re-query CCDS DB by Protein ID:NP_443747
Current member NCBI NM_053014.4 NP_443747.2 Accepted alive Link to Nucleotide Sequence:NM_053014.4Link to Protein Sequence:NP_443747.2Re-query CCDS DB by Nucleotide ID:NM_053014Re-query CCDS DB by Protein ID:NP_443747Link to BLAST:NP_443747.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443747.2 376 Q9D517 376 100% 0 0

Chromosomal Locations for CCDS 23963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 78273687 78273775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78274072 78274270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78278010 78278085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78282374 78282476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78283095 78283248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78284189 78284350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78284995 78285164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 78287847 78288024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGGCCTGCTTGCCTACCTGAAGACCCAGTTCGTGGTGCACCTGCTCATTGGCTTCGTCTTCGTGGTGA
GCGGGTTAATTATCAACTTCACCCAGCTGTGCACACTGGCCCTCTGGCCCATCAGCAAGCACCTATACCG
CCGTATCAACTGCCGCTTGGCCTACTCGCTCTGGAGCCAGCTGGTCATGCTCCTGGAGTGGTGGTCCTGC
ACGGAGTGCACTCTCTTCACCGACCAGGCCACCGTGGACCACTTTGGGAAGGAGCATGTGGTTGTTATCC
TCAACCACAACTTCGAGATCGACTTCCTTTGTGGGTGGACGATGTGCGAGCGGTTTGGCGTGCTGGGGAG
CTCCAAGGTGCTGGCTAAGAGGGAGCTGCTGTGTGTGCCTCTCATCGGCTGGACGTGGTACTTCCTAGAG
ATCGTATTCTGCAAACGGAAGTGGGAGGAAGACCGGGACACCGTCATAGAGGGCCTGAGGCGCTTAGCTG
ACTACCCAGAGTACATGTGGTTTCTCCTGTACTGCGAAGGAACACGCTTCACAGAGACCAAGCATCGCAT
CAGCATGGAGGTGGCTGCCTCCAAGGGGCTGCCCCCACTCAAGTACCACCTGCTGCCCCGGACCAAGGGC
TTTACCACGGCAGTCCAGTGCCTCCGGGGGACAGTTGCAGCTATCTATGACGTGACCCTGAACTTCAGAG
GGAACAAGAACCCATCTCTACTGGGGATCCTGTATGGGAAGAAATATGAGGCAGACATGTGTGTGAGGAG
GTTCCCCCTGGAAGACATCCCAGCAGATGAGACCAGCGCCGCCCAGTGGCTTCACAAGCTGTACCAGGAG
AAGGATGCCCTGCAAGAGATGTACAAGCAGAAGGGTGTATTCCCAGGGGAGCAGTTCAAGCCTGCCCGAA
GGCCGTGGACCCTCCTGAACTTCCTGTGCTGGGCCACCATCCTCCTCTCACCCCTCTTCAGCTTCGTCCT
GGGTGTCTTTGCCAGTGGATCCCCGCTCCTCATCCTGACGTTCTTGGGGTTCGTGGGAGCAGCTTCCTTC
GGAGTCCGGAGACTGATAGGAGTGACTGAGATAGAGAAAGGCTCCAGCTATGGCAACCAAGAGCTTAAGA
AAAAGGAATAA

Translation (376 aa):
MGLLAYLKTQFVVHLLIGFVFVVSGLIINFTQLCTLALWPISKHLYRRINCRLAYSLWSQLVMLLEWWSC
TECTLFTDQATVDHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLE
IVFCKRKWEEDRDTVIEGLRRLADYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLPRTKG
FTTAVQCLRGTVAAIYDVTLNFRGNKNPSLLGILYGKKYEADMCVRRFPLEDIPADETSAAQWLHKLYQE
KDALQEMYKQKGVFPGEQFKPARRPWTLLNFLCWATILLSPLFSFVLGVFASGSPLLILTFLGFVGAASF
GVRRLIGVTEIEKGSSYGNQELKKKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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